| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0725 |
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| Symbol | |
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| ID | 1044557 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 841326 |
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| End bp | 843047 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637144119 |
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| Product | TPR domain-containing protein |
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| Protein accession | NP_742886 |
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| Protein GI | 26987461 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | [TIGR02996] repeat-companion domain TIGR02996 |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.883173 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAAC CATACGCATT GCTGCTTGCC TTCGCCCTGC TACAGGGCTG CCAAAGCCTG
GCCCCGCAAA AGGCCGAGCC TCCCGTCGCC GAAGCTGGCA AGGGCGAGGC GGAAAAGCCC
GTGGTGTATG GCTCGTTCAA GCAGGACACA CTCTATAGCC TGTTGGTGGC AGAGCTGGCC
GGCCAGCGCA ACCGTTTCGA CATCGCCCTG GCCAACTACA CCGATCAGGC GGCAAAAACC
CAGGACCCCG CAGTTTCCGA GCGCGCCTAC CGCATTGCCG AGTATCTCGG CGCCGACGAG
CCGTCACTGG AGAATGCACT GGTCTGGGCG CGCAACGACC CGCAGAACCT CGACGCCCAG
CGCGCCGCGG CCATCCAGCT GGCCCGCGCC GGTCGCTATG ACGAGTCCAT GACCTACATG
GAAAAGGTAC TGCAGGGCCA GGGCGACACC CACTTCGACT TCCTCGCCCT GTCCGCAGCC
GAAACCGACC AGAGCACCCG CGACGGCCTG CTACACAGTT TCGAACGCCT GCTGGTGAAA
TACCCCGACA ACGGCCAGCT GATATTCGGC AAGGCCCTGC TGCTGAACCA GGACGGCAAG
ACCGAAGAAG CCCTGGAACT GCTCGAGTCG CACCCGGCAC AAAACGGCGA AGTCGCCCCG
ATCCTGCTGC GCGCCCGTCT GCTGCAGGCC CTGGACCGAG GTCCGGAGGC CCTGCCACTG
CTGCGCGGGG CGATTCGCGA CAACCCGGAC GACAAACGCC TGCGCCTGAC TTACGCTCGC
ACCCTGGTCG AACAGGACCG TATCGCCGAT GCCAAAGGCG AGTTCATCAG CCTGGTCCAG
CAATACCCCG ATGATGACGA ATTGCGCTAC TCGCTGGCGC TGGTGTGCCT GGAGAACAAA
GACTGGGATG AAGCCGAAGG CTACTTGCAG GAGCTGGTCG AGCGCGACAG CTACGTTGAC
GCCGCGCACC TGAACCTGGG CCGCATCCAC GAGGAGCGCC ACGACCCTGC TGGCGCTCTG
CGTGAATACG CCCTGGTCGG CCCGGGCCCA GACTACCTGC CGGCACAACT GCGCCAGGCC
GACATCCTGA TCGCCAACGG CCGCGGCACC GAGGCCTCGC GCCTGCTCGC CGACGCGCGC
GAAGCCCAGC CAGACTACGC CATCCAGCTA TTCCTGATCG AATCGGAAAG CTACAGCAAC
AACAACAAGG ACGCCCAGGC CAACCAGGTG CTGCAACAAG CCATCCAGCG CTACCCGGAC
GACCTCAACC TGCTTTACAC CCGCGCCATG CTGGCCGAGA AGCGCAACGA TTTGACGCAG
ATGGAAAAAG ACCTGCGCGC CATCATCACC CGCGAGCCAG AAAACGCCAT GGCCCTGAAC
GCCCTTGGCT ACACACTGGC CGACCGCACC ACCCGCTATA CCGAAGCCAA GGCGCTGATC
GACAAAGCCC ACCAGCTGAC CCCCGATGAC CCGGCAGTGC TCGACAGCCT GGGTTGGGTC
AACTATCGCC TGGGCAACCT CGACGCAGCT GAAACCTACC TGCGCCAGGC CTTTGCCAAC
TTCCCCGACC ACGAAGTGGC CGCCCACCTG GGCGAAGTGC TGTGGGCCAA CGGCAAGCGC
CGCGAAGCCC GCCAGGTATG GGCCAAGGGC TTCGAAGCCC AGGCCGACAG CCCTATCCTG
CGCAAGACCC TCTTGCGCCT GACCGGATCC GAGACTCTTT AA
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| Protein sequence | MNKPYALLLA FALLQGCQSL APQKAEPPVA EAGKGEAEKP VVYGSFKQDT LYSLLVAELA
GQRNRFDIAL ANYTDQAAKT QDPAVSERAY RIAEYLGADE PSLENALVWA RNDPQNLDAQ
RAAAIQLARA GRYDESMTYM EKVLQGQGDT HFDFLALSAA ETDQSTRDGL LHSFERLLVK
YPDNGQLIFG KALLLNQDGK TEEALELLES HPAQNGEVAP ILLRARLLQA LDRGPEALPL
LRGAIRDNPD DKRLRLTYAR TLVEQDRIAD AKGEFISLVQ QYPDDDELRY SLALVCLENK
DWDEAEGYLQ ELVERDSYVD AAHLNLGRIH EERHDPAGAL REYALVGPGP DYLPAQLRQA
DILIANGRGT EASRLLADAR EAQPDYAIQL FLIESESYSN NNKDAQANQV LQQAIQRYPD
DLNLLYTRAM LAEKRNDLTQ MEKDLRAIIT REPENAMALN ALGYTLADRT TRYTEAKALI
DKAHQLTPDD PAVLDSLGWV NYRLGNLDAA ETYLRQAFAN FPDHEVAAHL GEVLWANGKR
REARQVWAKG FEAQADSPIL RKTLLRLTGS ETL
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