Gene PMT9312_1454 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPMT9312_1454 
Symbol 
ID3766270 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. MIT 9312 
KingdomBacteria 
Replicon accessionNC_007577 
Strand
Start bp1365542 
End bp1366333 
Gene Length792 bp 
Protein Length263 aa 
Translation table11 
GC content30% 
IMG OID637797990 
ProductRNA-binding S4 
Protein accessionYP_397950 
Protein GI78779838 
COG category[S] Function unknown 
COG ID[COG2302] Uncharacterized conserved protein, contains S4-like domain 
TIGRFAM ID[TIGR03069] photosystem II S4 domain protein 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTGACT TAAAAGAAAT CTTAATAAAC TCAAACTACA AAGAAGAAAC TGAGGAATTA 
ATAAATATTG CTAACTTAGC TTACAAACAC TGGGAAACTT ATTGGACTGG ATTTAACTCA
ACTTATGTTT GCGAGGAGAT TTCAAAAGAT TTTGAAAATT TAAATGATTT CAAATTTTTT
GTTTATGGAG GATTCTCTTC CTCTCAAAGA TCAAGAATAG CTTGCTTTAG AGGAGATAAC
ATTCCTGAAG AGGATGCACT AAAAAGTAAT TTTCCAGCTC AAGGGATAAA AATTAATGGC
AATTTTTTAT TTGATAATGC TACACAAGAC GATTTTAGAT CCCTCTTAAT TGAAAATGGG
GTACATAAAG TAAAAGTAGG CGATATATGG ACTATTGGAG ATAGGGGGGC ACAAGGAATA
ATTGATAATT TAGATATTGA GCATCTAAAT GAAAAGATTT TTTATTTGAG AGACGTAAAA
GTAAAAATTA ATTTAGTTGG TATAGATGAA TTACAAATAC CTTCTGGAAG AACAAAAAAA
CTTGTTAATA CAGTAGAAGC TTCAACAAGA TTAGATGCTA TAGCTTCAGC AGGTTTTAGG
ATATCACGAA CCAAAATCAT TGAAAGGATA GAAAATGGAA TGCTCAAATT AAATGGAAGC
AAAGTTAACA AGCCAACTAT TAATCTAAAA ATTGGCGACA AACTAGAACT AGAAAATAAA
GGATTTATCG AAATTCTAAA TTTAGAAATC ACCAAAAGAG AAAGATGGAA AGTTAAATTA
CTTAGAAAAT GA
 
Protein sequence
MIDLKEILIN SNYKEETEEL INIANLAYKH WETYWTGFNS TYVCEEISKD FENLNDFKFF 
VYGGFSSSQR SRIACFRGDN IPEEDALKSN FPAQGIKING NFLFDNATQD DFRSLLIENG
VHKVKVGDIW TIGDRGAQGI IDNLDIEHLN EKIFYLRDVK VKINLVGIDE LQIPSGRTKK
LVNTVEASTR LDAIASAGFR ISRTKIIERI ENGMLKLNGS KVNKPTINLK IGDKLELENK
GFIEILNLEI TKRERWKVKL LRK