Gene PMT9312_0953 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPMT9312_0953 
Symbol 
ID3765756 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. MIT 9312 
KingdomBacteria 
Replicon accessionNC_007577 
Strand
Start bp883065 
End bp885284 
Gene Length2220 bp 
Protein Length739 aa 
Translation table11 
GC content27% 
IMG OID637797477 
ProductRNA binding S1 
Protein accessionYP_397449 
Protein GI78779337 
COG category[K] Transcription 
COG ID[COG0557] Exoribonuclease R 
TIGRFAM ID[TIGR00358] VacB and RNase II family 3'-5' exoribonucleases 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.472283 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCTCTA CATCTTCTAT AATTGATAAT CTTAATAATT CAGAAGGGTT AGAATATAAA 
AAATTATGCC GATCATTAAA AATAACAAAG AAATCTGATA AAGATAAATT AGATATCGCT
TTAACAGCTC TAGAAAAACT TGAAATAATA AATAAAAATG CAGTTAATGA ATATTCCTGC
ACAAAAGATA GCAATCATAT AGTCGCCAAA ATAAGATGTA GTAGCAAAGG TTATTGCTTT
GCAGTGAGGG AAAAAAACAA AGAAGATATC TACATTAAAG AAAATCTACT TAATTATGCA
TGGAATGGAG ATAAAGTTTT AGTAAGGATA ATAAAAGAGG GTTACAGAAG AAGATCACCT
GAGGGAATAG TTGACTGTAT TCTTGAAAGA TCAAATCAAA TACTTCTTTC TAAAGTTGAA
GAAATAAACA ATGATATATA TGCTATTCCT ATCGACGACA GGATACTTTC TAAAATAAAA
CTTCCAAAAG AGGATAAGAA ATACACTTAC AAACCAGAAA ATAAGAATAT AGTTAAAGTT
GAGATTGATC GATTTCCCAT AGGTCAAGAA GAAGGTTTAG GCCATGTTAT ACAAGAACTA
GAATTAAATA ATAATGAGGA ATTAGATACA GATTTTGTTT TATCTAAAAG CAATATCGTC
GAATTAGACA ATGAAAATCT TGTTAAATCT AAGAAGATAG AAAAAAGGGA AAGAATAGAC
TTAACAGATA AAAACTCTTA TTTATTCAAA AGTTGGAAGT CTGATAATTC TCCAATGCTC
CCAATAATTC AAATAGAGCA GGAAAAAAAT AAAAATACTA AACTTTGGAT ACATACAAAT
AATCTTGCAG AAATAGTAGA ACTAAATAAT AAAAAGGCCT TAGAAATACT TAATAGCTTT
GAATCATTAC CCTTATTGAA TAATTGGAAA CCCTACCATA GTGAATCCAT AAGAAATACT
TCTGAATTTA AATTAGGTGA AAAGAATGAA GCAATAAGCC TATGCTTGCA TTTAGATAGC
GATAATGAAA TAACTAAATG GTCATTTCAT CTTACTTTAG TAAAATGCAC TCTAATTATT
GGAAGTGATC ATACTGACGC CCTTCTATCA AGAAAAAGTA AAACTAGAAT AACCTCAAGG
TTACTCAAAC CAATAAAGCA ATATATCGAA GATGTGGATA AAATACTTGA AATTTCTACT
TCATTCAGAC AAAGACATCT CTTGGAAGGT AAAGTTGAAA TCCCTGCGCC ACATAATAAA
ATTGAATCCT TAGACGAATT TTTTATTCAC AACCCTGCTG AAAATTCAAA AGGATATTTT
GAACCATTAA AAAAAGAAGA TTGCCAAACA TACCTTTCTC CAATACTACA TGAAGCGAAT
TTAATATGGT TCAAACATTC AAATCAACTT GGCTTAAAAA GTGCAGGTTA CTTTTCAAAG
GGAATAGATT ACATTAATGC AAATGAACTC ATCAAATATT CAGAATTTGT TGATAATGAA
GTAGAGCTTA ATGAAGATGG TAATTTATCA TTTAGTCAAA TAATTAAGTT ATGCGGCGAT
GATAATAAAA AAAGAATCTT ACATAAACTT TTAATTAATG AATTTAAGGA AAATGAAGTA
AACCTGATTT CTAATAATGC AGATAACAAT GAATCAGAAA AACTATATAT TTCGCCATGG
ACAATTCCTG GATATGACTT CACAAATCTT ATTAACCAGT ACTGTATTTT TAATATGATA
ATAAATGGTA AGAAATCAAA GAAAAATAAT ATTAATGAAA TAAACATATT GGAAAGTGAT
TCGTTAAATT TAATAGATTG GGATATATTT AATTCGTCAA TTATAAAGAA TATAGATACA
TTATTTAATA AATTTATAAT AGATAAACTT AATGAATATA AGTGCAAAAT AAACCAATAT
AAATTAAATA TGATAAGTAT AAAAAAAGTA AGAAAGGCTG AGAATTTATT AGGCAATATT
TACAATGGGT TTATATTGTC AGTTCAAAGT TATGGTTTCT TTGTTGAGAT ATCAGATCTA
AATGTGGAAG GTCTTGTCCA CGTCAGCACC CTTAATAATG ATTGGTATGA ATATAGATCA
AGACAAAATT TATTGATTGG TAGGAAATCT AAGAAATCAT ATAAAGTTGG AGATGAAATA
GAAGTTAAAA TTATAAAAGT TGATATTCTT AAATATCAAA TTGATTTAGA GTTAACATAA
 
Protein sequence
MFSTSSIIDN LNNSEGLEYK KLCRSLKITK KSDKDKLDIA LTALEKLEII NKNAVNEYSC 
TKDSNHIVAK IRCSSKGYCF AVREKNKEDI YIKENLLNYA WNGDKVLVRI IKEGYRRRSP
EGIVDCILER SNQILLSKVE EINNDIYAIP IDDRILSKIK LPKEDKKYTY KPENKNIVKV
EIDRFPIGQE EGLGHVIQEL ELNNNEELDT DFVLSKSNIV ELDNENLVKS KKIEKRERID
LTDKNSYLFK SWKSDNSPML PIIQIEQEKN KNTKLWIHTN NLAEIVELNN KKALEILNSF
ESLPLLNNWK PYHSESIRNT SEFKLGEKNE AISLCLHLDS DNEITKWSFH LTLVKCTLII
GSDHTDALLS RKSKTRITSR LLKPIKQYIE DVDKILEIST SFRQRHLLEG KVEIPAPHNK
IESLDEFFIH NPAENSKGYF EPLKKEDCQT YLSPILHEAN LIWFKHSNQL GLKSAGYFSK
GIDYINANEL IKYSEFVDNE VELNEDGNLS FSQIIKLCGD DNKKRILHKL LINEFKENEV
NLISNNADNN ESEKLYISPW TIPGYDFTNL INQYCIFNMI INGKKSKKNN INEINILESD
SLNLIDWDIF NSSIIKNIDT LFNKFIIDKL NEYKCKINQY KLNMISIKKV RKAENLLGNI
YNGFILSVQS YGFFVEISDL NVEGLVHVST LNNDWYEYRS RQNLLIGRKS KKSYKVGDEI
EVKIIKVDIL KYQIDLELT