Gene PICST_90954 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_90954 
Symbol 
ID4840669 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009047 
Strand
Start bp898914 
End bp900156 
Gene Length1243 bp 
Protein Length336 aa 
Translation table12 
GC content41% 
IMG OID640391984 
Productpredicted protein 
Protein accessionXP_001386362 
Protein GI150866688 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.919235 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GACCTTAGAT TACTCTGTTA CAAGAATTTG TTGAATGTTT CAGCATTTTT CAATCTCAAT 
GCCAAGAGCA GTATTTTTCA CTTCATAACC AAATTCAATC GACATATTCA AAGTCATTTT
CATATACATA ACGACCAAAA AAGTCTTATT CAATTCGTAG TATATGCCAA GAAGACCCTC
TACAGGTACA CAGTCGGATA CTCCTGCTCT CCATGTAGTT CCCAGCTTTT ATGGAGTCTA
TCTTCTTCAG CTGGAACCCA AGCCAAGCTC GTTCTATATC GGATCAACCC CAGATCCTCC
GCGTAGGTTG AGACAACATA ATGGAGATCT CAAAGCTGGT GGGGCGTACC GCACCAAGCG
GGCAGGATTC AGACCCTGGA GGATGTTGCT CGTTGTGTAC GATTTCCCGT CCAAAGTGTC
TGCTCTCCAA TTCGAACATT CTTTTCAACA TTGCCATGAG ACAAGACATA TCAAACAAGA
AGAAAGAATA TCAAAGAACA AGTTGTCAGG TAGAACGCTA CATCACAAGG TTGCCAACGT
AGCATTGTTG CTACGCTCTA GCTACTTTCG CCATTTGCCC CTAAAGGTCT TAGTGTTTGA
AGAGGCTGTT TACAATCTGT TTATGAACAA TAAGTTTGTA ACCTGTAGCC ATGTAGACTT
ATTGAATACC AATTTCAACG AATACTTTTC AGTGATGGAA AAAGATGTCC AAGGAAATGA
AACAATCAAA AACGCTACAA GCCAACTTGA AGCTCAAGGT TCTCAGAAAA GCCAGCTTGA
CTCTACTGTA GATTCTTGGA AAACGAGGCA TACAAACGAG AATGAGATAT GGAGCATGGC
AAAGGAGGCG GTGATCCTTG GGTCTCCTCG ATGTGCATTG TGTTTGGAGC CAATTGAACA
AGTACCCGAA ACTCTGCTGC CAATAAGCAA AAGGTCAGAT CTTCAGAGAT ACTTACAAAG
TGAAAGTCTT CCTCTTGTGA CCATGTGCTA TAATCCTCAA TGTAGAGACG TTTTTCATTT
GTCATGCCTT GGCCACAGAT TCACTAATAG TGATGGCTTC CAAAGCCTCA TCCCTGCAAC
TGTAAATAGG TGCTGTCTGT GTAATGCAAA GTTAGAATGG AGAACGTTGG CCAAGATTGC
TACGAAGTTA CGATATTACG TCCTAAAAGA TTCCCTTCAA CTACCAAGTC AAGTCTTGGA
AAACGACGAC AACTACGAAT CTCAAAATGT GAATGATTCT TAA
 
Protein sequence
MPRRPSTGTQ SDTPALHVVP SFYGVYLLQS EPKPSSFYIG STPDPPRRLR QHNGDLKAGG 
AYRTKRAGFR PWRMLLVVYD FPSKVSALQF EHSFQHCHET RHIKQEERIS KNKLSGRTLH
HKVANVALLL RSSYFRHLPL KVLVFEEAVY NSFMNNKFVT CSHVDLLNTN FNEYFSVMEK
DLDSTVDSWK TRHTNENEIW SMAKEAVILG SPRCALCLEP IEQVPETSSP ISKRSDLQRY
LQSESLPLVT MCYNPQCRDV FHLSCLGHRF TNSDGFQSLI PATVNRCCSC NAKLEWRTLA
KIATKLRYYV LKDSLQLPSQ VLENDDNYES QNVNDS