| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_88627 |
|---|
| Symbol | HDT2 |
|---|
| ID | 4838081 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009043 |
|---|
| Strand | - |
|---|
| Start bp | 750073 |
|---|
| End bp | 751788 |
|---|
| Gene Length | 1716 bp |
|---|
| Protein Length | 571 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640389396 |
|---|
| Product | conserved hypothetical protein |
|---|
| Protein accession | XP_001383775 |
|---|
| Protein GI | 150864799 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00146356 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACTG AAATCAGACA CAGAGGAACA TCTTCCAATG ACAAGTCTTT CGAGTCTGTT
CCTACAACTG AAGAGCTTTT GGTTGAAAAA TTAGACGTTT TCTTATCGTC TATCGAGTCT
CGTTTAGACA ACTTTGAGCA CTTTTTCAAA TTCAAGTCCC AAGAACTCAA AGAAGCTAAA
GAGCTCAACT TGTCAACTTT TGCGGAAAAT GTCTCTCGTT CAAGACGAGA TAGCACAGCT
AGCTTGTCCA ACATCAAGAA CTACTCCATC AACAATTTGA ACCTCATTCA CCAGAGACTT
CATCTCATCA AGGACTCCGT ATTGCGATCT TCTTTCACCA ACTTGGAGTA CTTGTACAAT
ACGCTTGATG ACCAGTATAA CTATTTATTC AACAGCACAT CTTCTGAAGA TAGTGATTCT
GCAAGTTCCG TAGACAAAGA ATTAATAGCT AGTTCAAGCA ACAGAAAGGA GATCTTGTCT
CAAAAAATCA TAGCCACCAT CCAGTATTTC GATGAAAAAT TGCTACTGAT CGATGCCTTC
ATCAACGACA ACAAGCCAGA AAGAAGACTC GACTACGAAG AAGACTCCAC ACTTCTTCAG
TTACGATTTT TTAACTTCAA TAGAGCTTTG AAGAATGCCA AAGACAGATA CTTGCACTAC
TACGAGTTGC CTCTAAGTTG GAGAGAAAAC AAGTACATAG TATATGGTTA TCGGTACTCG
TTGAACCACA GCACCATGCT AAAGTCGATC TTTGAATTCA ACCACAACGA ATCTATGAAC
ATATGGACCC ATATCATAGG ATTCTTTTTT GTGGGATATT TAACTCTCTG GCACTTCCCT
AATACCGATG TTTACAAGCT GAACTCGTTC AATGACAACT TGCCCGTCTT CGTCTTTTTT
GGAGCGGCCT TGAAGTGTCT TATCAGTTCT GTGACATGGC ATACGTATTC CTGTTTTGCC
CACTTGCCTA CCAGACAAAT GTGTGCATGT GTAGACTATA CTGGAATCAC TGTGTTGATT
ACTTGTTCCG TTATAGCTGC AGAATACTGT GCATTGTTCA ATTACCCCAA GATCCTAAAG
GTGTATATAA CGTTTTCCAC GATTTGTGGT ACCTCCGGGT TCGCATTTAA TTGGTCGCCT
TACTTCGATA AGCCCGAATG TAGATCCGTG AGAATCGGCT TCTTCATGGG GTTAGCATTT
TTGGGTGCAT CTGCCGGTGT TTGTATGGCG ATATACGAAG GCGTTCTCCC CACACTCAAG
TTCTTCTTTC CTCTTGTCTA CAAGAGTTTT GTGTGGTACT GGTTGGGGGT TATTTTCTAC
GGAGGTCTAA TTCCAGAAAG ATGGAGATAT GATGTGATCA TTGAAGAGAA CACTAAAGTA
TGCCACCACA ACTATGACAC CAGAGACGTC TTATTGGACA ATATCGAAAA TAGTGGTCGT
GAAGAAATCG AAGAAATTGA AGAGGAGTTT GAGAATATCG AGGAAAAGCA TTTACCAGAG
GACGAAGAAG AGGCCAGATT CAAAGATATT ATAGCCAAAC ATTTTCCCGA GAAGCCAACC
ACTACTCCCT ACAGTCATGA GTTCCTTTCG TTGTGGTGGG TCGACTACTT TTTGGCAAGT
CATAATATCT GGCATATCTG TGTCGTGTTG GGGGTAGTGG GACATTATTT TAGTTTGTTG
GACATGTATA GAAATATCGA AAGAGCTGCT ACATAG
|
|---|
| Protein sequence | METEIRHRGT SSNDKSFESV PTTEELLVEK LDVFLSSIES RLDNFEHFFK FKSQELKEAK
ELNLSTFAEN VSRSRRDSTA SLSNIKNYSI NNLNLIHQRL HLIKDSVLRS SFTNLEYLYN
TLDDQYNYLF NSTSSEDSDS ASSVDKELIA SSSNRKEILS QKIIATIQYF DEKLLSIDAF
INDNKPERRL DYEEDSTLLQ LRFFNFNRAL KNAKDRYLHY YELPLSWREN KYIVYGYRYS
LNHSTMLKSI FEFNHNESMN IWTHIIGFFF VGYLTLWHFP NTDVYKSNSF NDNLPVFVFF
GAALKCLISS VTWHTYSCFA HLPTRQMCAC VDYTGITVLI TCSVIAAEYC ALFNYPKILK
VYITFSTICG TSGFAFNWSP YFDKPECRSV RIGFFMGLAF LGASAGVCMA IYEGVLPTLK
FFFPLVYKSF VWYWLGVIFY GGLIPERWRY DVIIEENTKV CHHNYDTRDV LLDNIENSGR
EEIEEIEEEF ENIEEKHLPE DEEEARFKDI IAKHFPEKPT TTPYSHEFLS LWWVDYFLAS
HNIWHICVVL GVVGHYFSLL DMYRNIERAA T
|
|---|
| |