| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_88354 |
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| Symbol | SEC24 |
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| ID | 4837868 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009043 |
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| Strand | + |
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| Start bp | 1056503 |
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| End bp | 1059601 |
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| Gene Length | 3099 bp |
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| Protein Length | 907 aa |
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| Translation table | 12 |
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| GC content | 46% |
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| IMG OID | 640389183 |
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| Product | SED5-binding protein 2 (SEC24-related protein 2) component of COPII coat of ER- Golgi vesicles |
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| Protein accession | XP_001383490 |
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| Protein GI | 150864604 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5028] Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | AAACAGTGCC ATTCAATCAC CACTGTTCTT TCCGTAATTG TCTCGATTCA TTTCTCAATT
CTGTGAAAAC TCTCTGACAT GTCCAGCAAG AGAAGAGCAT ACCCACAGCC GCTGTACACC
AACGGCCCCG GCTCTCAGCT CGGAACTCCT CCTGTAGCCG GAGGATTCCA ACAGCCAAAC
TATGGTGTGG ACCAGTTGAA CCAACAGTTC CAGGGCATGA ATGTAGACCC CAACCAGGCA
GCCGTAGCAG GAGCTCCACA GGCTGCTGCT GGGAGCCCAT ACGGCTATAA CCAGTACCAG
CAGCCTGGTG CTAATGCAAA TGCTGCTGTA GGAGGTACGG GTGCTGCAAT TGGTAACACT
AACAGCAACA ACAATAATAT CAACCCAGGT GCCAATTCTC CATATGACGC GTACTCGCAA
ACACAACAGC ACCAATCTCG TGCTGGCAAT GCTGCTGGTG CCTCGTCGTA CTACCTTCAA
CAGGGCAACA TTAATGCGGC GCTACCATTG AATCAACTCT ATACGACAGA TTTGTCTCGT
GAGTTGCCTC CTCCCATTTC TGACTTGTCG TTGCCTCCTC CACCAATCGT CTTACCAGCT
GGAACAACTT TGATTCCAAA CTCAGAAACC GCCAATGCAC AACCAGAATA CTTCCGGTCG
ACGTTGAATG TTATCCCCAC CAACTCGTCG CTCTTGAAAA AGTCGAAGTT GCCCTTGGCT
CTCGTAGTGA AGCCGTACAA CGCTTTGAAA GTTGAGCAGG AAGACGTTCC CGTGACCTCA
GACACAACAA TCTCTAGATG TCGCCGTTGT CGTGGGTATA TCAACCCGTT TGTGACATTG
GCTGAAAACG GTAGAAGATG GAGATGTAAC TTTTGTAATT TGTTGAACGA TATTCCTTCG
CTGTTTGAAT ACGACGAGAT CAGCGGCACC GTTAAGAATA AGTTCGACAG AGTCGAGTTG
AACAATGCCG TCGTTGAGTT CATTGCTCCC AAAGAATACA TGGCCAGAGC TCCTCAACCG
ATCGTTTACA CCTTTATCAT CGATGTTTCT ATCAACGCTG TTCAGTCGGG TTTAACGGGA
ACCATCACCA GAACTATCTT GGAGTCGTTG GACAGAATTC CTAACAAAAC CAAGACAGCT
AGAGTGGCTT TCATCGGAGT TGACTCCAAC TTGCACTACT TCAGATTCAA TGAAGGCTTG
GACGGCACTG AGGTGTTGAT TGTTTCCGAC ATCGACGAGC CCTTCTTGCC CTCACCAGAC
GGGTTGTTGG TCAATTTGGA CGAAAACAGA CAGGCAGTTG AAAAGCTATT GATTGATTTC
CCAAGCTACT TTGAAGACAC CGCCAACCAG GGCTTTGCCT TGGGCCCTGC CTTGAAGTCG
GGTCACAAAA TGATCAGCCA TATTGGAGGT AAATTGGTCT GTTTCTCGGC TACTTTACCA
AATATTGGTG AAGGTAAGTT GAGCGTTAGA GACGAAGCCA GCGTTTCAGG CAAGCCCAAA
GAAGCAAAGA CTTTGTTATC TTCGGCAGAC AGCTTCTACA AGTCGTTTGC TGTTAACTGT
AACTCGTCGC AGATCTCTGT GGATTTGTTC TTGACCTCTT CTTCCTACCA GGATGTAGCC
ACATTATCGA ACTTGCCTCG TTTCACAGCC GGTCAATCAC ACTTCTATCC TGCGTGGACC
AGTGCCAAGA ACGAGGATGT CACCAAACTT TCAAAGGAAG TCAGCGACCA TTTGTCCCAA
GACATAGCAT TGGAAGCTGT GTTGAGAGTC AGAGGATCTA CTGGTATCAG AATGTCGTCA
TTCTACGGTA ACTTTTTCAA CAGATCGTCG GACTTGTGTT CATTCCCAAC ATTCCCAAGA
GATCAGTCGT ATGTCATTGA AATGTCCATC GAAGAAAACA TCAATAAACC TGTGGTGTAC
TTCCAGGCCG CAGTCTTGCA CTCGACTTCT TTCGGTGAAA GAAGAATCAG AGTCATGAAC
TTGGCTATCC CCACGTCGTC CAAGTTGAAC GACATCTATG CTTCTGCTGA CCAGTTGGCT
ATTACCAATA TCTTTACACA CAAAGCCATC GAAACTGCAT TATCATCCTC TTTACCAGAC
GCCAGAGACT TCTTGGTCAA CAAAGTGGTG GATATCTTGA ACGTCTACAA GAAGGAGTTG
GTAGCTGGTA ACGTTTCCGG TGCTTCTCCT TTGCAGTTGT CCACAAACTT GAGAATGTTG
CCCATCTTGC TCTTCTCTTT GACCAAGCAC TTGGGTTTCA GAGCAGACAG AGTTCCTTCT
GACCATAGGG CTGCTGCATT GAACAACTTG GGCTCCTTGC CAATCCCATA TTTGGTTAAG
TACATTTACC CAACTGTATA CGCTTTGCAT ACCATGCCTG ATGAGTGCGG CTTGCCAGAA
AAGTTGATCC AAGTCAACGA AGAAACTGGC GAAGAAGAGG AAGTCATCTC AACCAACATC
ATGTTGCCCG AACCTATAAA CGACTCCAAG TCGTCATGGG AAAACTACGG TTTGTACTTG
ATTGACAACT CGAGTGAATT GTTCTTGTGG GTATCCGGTA ACGTTGTGCC TGGTTTAGTA
CAAGACTTGT TTGGAACAGA CAACTTGTAT GCTATTCCAA CAGGTAAGAC TGAATTGCCT
GAATTCAGTG ATGAGGAGTC CGAATTTAAC TTCAGAGTTC GTCAAATCAT TGGCAAAATT
AGAGAAAACA ACGACTCCAT TGTCTGGAAG AACTTGTATG TCGTTGTTGG TGGATCCTCC
AACGAACCAA TCGAGATTTC CCAGCAACGT GACTTGATGG CTTTGAGAAT GTGGGCCTAC
AGCTGCTTGG TTGAAGATAA GACCGGCAGC GAACCATCAT ACAGAGACTT CTTGACCAAC
TTAAAAACCA AGGTTTCCCA GTAGATGATA AAAGGACATT GATTTTGTTG TCTGCCATGT
CCATCACGTA AATTTATTTC TACATTATAT AAATTCATTA ATGTATTGTT TATTGCAATT
GTCTTTTGGT TAAATCACTC TATCTAGCAC CCTTGATGAG ATCAATAGCA TCAAGAAGAA
AGTCTCTTTC ATTGTCGTTC TTGAACGTTT CTTCAATGG
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| Protein sequence | MSSKRRAYPQ PSYTNGPGSQ LGTPPVAGGF QQPNYGVDQL NQQFQGMNVD PNQAAVAGAP
QAAAGSPYGY NQYQQPGANA NAAHQSRAGN AAGASSYYLQ QGNINAALPL NQLYTTDLSR
ELPPPISDLS LPPPPIVLPA GTTLIPNSET ANAQPEYFRS TLNVIPTNSS LLKKSKLPLA
LVVKPYNALK VEQEDVPVTS DTTISRCRRC RGYINPFVTL AENGRRWRCN FCNLLNDIPS
SFEYDEISGT VKNKFDRVEL NNAVVEFIAP KEYMARAPQP IVYTFIIDVS INAVQSGLTG
TITRTILESL DRIPNKTKTA RVAFIGVDSN LHYFRFNEGL DGTEVLIVSD IDEPFLPSPD
GLLVNLDENR QAVEKLLIDF PSYFEDTANQ GFALGPALKS GHKMISHIGG KLVCFSATLP
NIGEGKLSVR DEASVSGKPK EAKTLLSSAD SFYKSFAVNC NSSQISVDLF LTSSSYQDVA
TLSNLPRFTA GQSHFYPAWT SAKNEDVTKL SKEVSDHLSQ DIALEAVLRV RGSTGIRMSS
FYGNFFNRSS DLCSFPTFPR DQSYVIEMSI EENINKPVVY FQAAVLHSTS FGERRIRVMN
LAIPTSSKLN DIYASADQLA ITNIFTHKAI ETALSSSLPD ARDFLVNKVV DILNVYKKEL
VAGNVSGASP LQLSTNLRML PILLFSLTKH LGFRADRVPS DHRAAALNNL GSLPIPYLVK
YIYPTVYALH TMPDECGLPE KLIQVNEETG EEEEVISTNI MLPEPINDSK SSWENYGLYL
IDNSSELFLW VSGNVVPGLV QDLFGTDNLY AIPTGKTELP EFSDEESEFN FRVRQIIGKI
RENNDSIVWK NLYVVVGGSS NEPIEISQQR DLMALRMWAY SCLVEDKTGS EPSYRDFLTN
LKTKVSQ
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