Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_86955 |
Symbol | UTP5 |
ID | 4851980 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009068 |
Strand | - |
Start bp | 3349342 |
End bp | 3351603 |
Gene Length | 2262 bp |
Protein Length | 664 aa |
Translation table | |
GC content | 42% |
IMG OID | 640393688 |
Product | part of small (ribosomal) subunit (SSU) processosome (contains U3 snoRNA) |
Protein accession | XP_001387210 |
Protein GI | 126276201 |
COG category | |
COG ID | |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00940306 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.367897 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | AATACCCAAG AAAGTTCCCG GCATTGTCAA AATAGACTGA ATACACTTAC AAAAGATATA GAAATAGCCA GTTTTTTTTT CTCCAGACTC GCATCATAGA AAACAGCCGA AAACGAATTC TGCTTCATTT CAAATTTCCA TAATCTCATC TCAAAAAGTT ACAATACTTA ATCTACATTC ATTCATAAGC CAGATTTCGC CCACAAAATG TCTTCAGTAA TAGTATCCAG ATTCGATCCC TCCAGGACAT ACTTGGCTAC GGCTTCTGTA GCTTTGGATG CTCATCAGAT TTCTGTGCAA TCAGTGCAGT GGTCTCAGAC GGCTGTGAAT ACTGTTTTTA AATTAGACAA GACTTCTCGA GTCACCAACT TGAAGTGGAT CCCTTCTGGC AACGGTAACG ATTTCTACAT TGCCGTGACA TTGACCAGGG GGTCTGTTCT TATTTATTCT CCTGAAAGCA ATGCTGTAGT CGCCGAATTG GCCACTTCGA ACAACTCCGC AATTCTTGAC TTCTACTTTT CTCCACATAC CCATACCGCC TGGTCGTGTG ATCTTGGAGG TTCAGTCCAG GAATGGGATT TGTCGAGTTT CCAATTGCTT CAGCAGTTCA AAATTACAGA CTTTGTTGAA AATGTCGAGT CGATCAACAG AATAGCGAGC GTCAGTTACG GAGGTAGTGC TCACTTGCTT GTAGGATCTC ATTCCATCTA CTTGGTAGAT ATTGCAAGCA AAGCACTTGT AAAAACGTAC CCGGGTCATG TTGAGCCATT AAACAGTCTT GTTCCGATTT CTAGCGATGC AGATTTGTTC CTCACTAGTG CCAAGGGAGA TCGTTTCATC AACATGTACT CTGTGGAGCG AGCTGTAACC AAGACTGTGT TTGTTACTCA GGCTCCTGTA GTAGATATTT TCGTAGGTAC AAAGGATAAC AAGTCTGTGT TGGTAGTCAT CAACGAGAAC GGCAATATCG AATTGTTCAA CAACCCGTTG CTGACGGAGG CCCCTTCCCA ACCAGCTACA CCATTGTCCA AGAAAAAAAG AAGACAGCAG TTGGTAAGTG TACAATCTCG TTCTCCACAG GCAACTATCA GATTGTCGAG ACCTCAGTCT GAAATCAAAA GTCATCAAGA TGCAAACTTG GTGATCGACT CAGTGACTAT CAGCGACAAT TCTGTAATTA TCTCGTGGTT GGAAAATTCC AACATATCAT ACTTTGAAAC CCTCCAATGG TTGGATGAGT CTGGAAATTT CCCATTTGTC TCTGATAGAA CCATTCACAA ATCTAAACCT GACTTGAAAG TCACCACCCA TTCCAGCCAT GGACACGATG TTGCTTCTGC TAAACTCTAC AGTGAAGGAC ATGCTATCAT AAGTGATGGT ACCAATGTCA GAGACTTGGA GTTGAATATT GAAGATGACA AAGAGGAAGA GACTTTGGCT GACAAGTTGG AGAAGCTCGG AGGAGAACAA AAGGCTCCAG CAAAGTCTAT CAAGACCAAG CACAAGTTAG GAGGAGATAA AACTGGTACA TTAACCATCA TCTTGTCTCA ATCGTTGAGA AACAATGACC ACTCGTTATT GGAGACAGTG TTAAGCAACC GTGATCCAGT TGTTATTCAG AATACCATCT CCAAGTTGGA CCCATCTTTA GCTGTAGTTC TTTTAGATAG ACTCAGTGAA AGATTCCAAC GTCAATCATC CAGATTCGAC CAATTGAACT ACTGGTTGAA GTGGATAGTT ATTATCCACG GCGCAGTGAT TTCCTCATTA CCGAATCTTA GCATTAAATT ATCAGGCTTA CATTCAATGT TGACCAAAAA AGCCGACACC TTGCCTCGTC TCTTGGAATT GCAAGGAAGA TTGCATATGT TGTACGACCA GAACGATTTG CGTAAGGAAA TCATGTCTGA AGAGCTTCGT GATGAAGACG AGGAAATTGA TAGTGACATC GAATACATTG AGGAAATTGA CGATGCCGAA GTATTGGGAC TTTTGAACGA TGACGACTTT GACATGGTTG AAGGCAGAGA CGATTACGTG GATAGTGACG AAGATGATGA CGAAGAAGTA GATGATGATG AGGAGGATGA TGAGGAAGAA GAAGAAGAAG GTATCAAATC TGCTCTTGAT TTGGATGACG AGAATGCAAG TGATGTCGAA ATTGGCGTCA ATAACAACGA TAGAATGGAG GATGATGAAT AGGTTCCCTG TAATATACAT AGACTACATA GCATGTACCA TAGACTTATA AACAGTCACT TG
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Protein sequence | MSSVIVSRFD PSRTYLATAS VALDAHQISV QSVQWSQTAV NTVFKLDKTS RVTNLKWIPS GNGNDFYIAV TLTRGSVLIY SPESNAVVAE LATSNNSAIL DFYFSPHTHT AWSCDLGGSV QEWDLSSFQL LQQFKITDFV ENVESINRIA SVSYGGSAHL LVGSHSIYLV DIASKALVKT YPGHVEPLNS LVPISSDADL FLTSAKGDRF INMYSVERAV TKTVFVTQAP VVDIFVGTKD NKSVLVVINE NGNIELFNNP LLTEAPSQPA TPLSKKKRRQ QLVSVQSRSP QATIRLSRPQ SEIKSHQDAN LVIDSVTISD NSVIISWLEN SNISYFETLQ WLDESGNFPF VSDRTIHKSK PDLKVTTHSS HGHDVASAKL YSEGHAIISD GTNVRDLELN IEDDKEEETL ADKLEKLGGE QKAPAKSIKT KHKLGGDKTG TLTIILSQSL RNNDHSLLET VLSNRDPVVI QNTISKLDPS LAVVLLDRLS ERFQRQSSRF DQLNYWLKWI VIIHGAVISS LPNLSIKLSG LHSMLTKKAD TLPRLLELQG RLHMLYDQND LRKEIMSEEL RDEDEEIDSD IEYIEEIDDA EVLGLLNDDD FDMVEGRDDY VDSDEDDDEE VDDDEEDDEE EEEEGIKSAL DLDDENASDV EIGVNNNDRM EDDE
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