| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_86944 |
|---|
| Symbol | HYU1.3 |
|---|
| ID | 4851678 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | + |
|---|
| Start bp | 2515860 |
|---|
| End bp | 2519828 |
|---|
| Gene Length | 3969 bp |
|---|
| Protein Length | 1322 aa |
|---|
| Translation table | |
|---|
| GC content | 40% |
|---|
| IMG OID | 640393386 |
|---|
| Product | 5-oxoprolinase |
|---|
| Protein accession | XP_001386818 |
|---|
| Protein GI | 126275236 |
|---|
| COG category | [E] Amino acid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0145] N-methylhydantoinase A/acetone carboxylase, beta subunit
[COG0146] N-methylhydantoinase B/acetone carboxylase, alpha subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.690875 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATCG CTAATCTCAC CAACGTAGAA ATCGCCATAG ATAGAGGCGG AACTTTTACT
GATGTCATAT ACAAGTACCG TGAACACGAT GTTGAGAACG AAGAAACCTT CAAGTTGTTA
TCTGTAGACC CTGCTAATTA CAATGATGCT AATATCGAAG GAATTCGCAG AGTGTTAGAA
ATGCTCACTC ACTCAACTAT TGCAAGAGGT ACTCCTCTTG ATACTTCGAT TATTAGTTCT
ATAAGGCTTG GAACCACAGT TGCTACCAAT GCTTTATTGG AGAGAAAAGG TGCCCGAATT
GCTCTAGTCA CCACGAAAGG GTTTAAAGAT TTGCTTCACA TTGGGGACCA GTCCAGACCA
AATTTATTCG CACTTAACAT TGTCAAGCCT GGAGTGCTTT ACGAATCTGT TGTTGAAGCA
GAGGAAAGAG TCACCATGCC TGCTTTCACA GGTGACCCCA CTGGTTATGA TGCGCAAGAT
CTCGTTGACA ATATCCATTA TGTACGTGGT GAGACCAATG AAGTTTTTGA AATTTTGCAA
CCATTGGATA CCGAAAAGTT AACCGCAGAT TTGCTCCTGT TGAGAAAAGA AGGCATTGAT
TCTATTGCCA TAGTCTTTAT TCATGGTTTC AATTTCCAGA AACATGAGAA AATTGCTGGT
TCTATTGCCA GAGAGTTGGG GTTCACTAAC GTTTCACTTT CTCACGAAAT TTTACCAGTG
ATCAAGACCG TTTCTAGAGG ACAATCTACT ACTGTTGACG CCTACCTTAC ACCAATTGTC
AAGGAATATA TTAACAACTT TGTAAGTGGA TTTAAAACTG GTTTTGAATC CCACACCAGA
ATTGAGTTCA TGCAATCCGA CGGCGGTTTA TGTTCCTGGA ACAACTTTAC TGGTTTGCGC
TCCCTACTCT CGGGGCCAGC TGGTGGAGTA GTTGGAGCAG CAAAAACTTG CTATGATGCT
GACAATCAGA TCCCTGTAAT TGGTTTTGAT ATGGGTGGTA CATCTACAGA TATCTCGAGG
TTCGCTGGGG AATATGAGTT TTCCTTTGAA AGTATCATCG CTGGAATCAA AATAGCTGCA
CCACAATTGG ATATCAATAC AGTCGCTGCT GGAGGTGGAT CTATTTTATT CTATAGAAAC
GGTACCTTTA TAGTTGGTCC TGAATCTGCT AGTGCACATC CAGGTCCAGC CTGCTATAGA
AAGGGAGGTC CTTTGACTGT CACTGACGCT AACTTGTTCA CCGGTAGAAT TATTCCTGAA
TATTTCCCCA AGATCTTTGG ACCTTGTGAA AATCTACCTT TGGATTATGA AGTTACCAAG
AAGAAATTCG AACAATTGAC GGAAACCATC AATAAGGAGA ATCCAGGTGC AACCAAGACT
CCATTGGAAA TAGCTTTGGG ATTCTTGAAA GTAGCCGATT TCCAGATGGC AAGACCAATT
AGAGACTTAA CGGAATCAAA GGGGCACGAT GTCAGCAAAC ATGCTCTTGC TTCCTTTGGG
GGTGCTGGTG GTCAGCACGC AACCTCGATT GCAAAAATAT TGAAAATTAA AAAAATCTTG
ATTCACAAAC ATTCCTCAAT ATTGTCTGCT TATGGTATTT CGTTGTCTTC TATTGTAAAT
GAACAACAGG AACCAGTTTC AGTAGCTTAC AACAAACTTA CTGCTTCTTC TTTGCTTGAT
AGATGTAACA AATTGAAACT AAAGTCTCAG AAAGAACTAA TTGACCAAGG AGTCTTGTCG
AAGTCTATTG ACTATGAGGT TTTTTTCAAT ATGAGCTACA AGGGTTCTGA TACAAGAATC
ATGATCAAGC AGGAGAAAGA CCAAGATTTC TTGCAATCTT TTTACACGAG ACACCAACTG
GAATTCGCTT TCAACGATTT CGAGAAATTG GTATTAGTGA CAGATATTAG AGTTAGAGCT
ACTGGCAGTA CTTCTGTTCA GACTGAAGAA CGTTCTCCAT ACAAGGATTA TGATTCAATT
AATAAGATTG AAGTGGATTC TGATCTTGTA CAGAAATCTA CAGACGTCCA TTTTGACCAA
GGAACCTTAT CAACTAAAGT TTTTTTCTTA CAGACTTTGC CTATTGGCTC AGTGTTGACA
GGGCCAGCCC TTGTTTTGGA TTCAACCCAA ACAATCGTTG TCTCTCCAGA TGCTACAGCT
ACCATTTTAC CAAGACATGT AGTTATCGAC ATACATACAG AAGAAAAACA TTTCATTTCT
ACTGATTATG TCGACCCTAT TCAATTGTCA ATATTTGCAA ACAGATTTAT GTCGATTGCC
GATGATATGT CACGAACACT TCAAAAGATT TCTGTCAGTG CAAATATTAA AGAACGTTTG
GACTACTCTT GTGCATTGTT CGATAACAAG GGAAATCTCG CTGCTAATGC ACCAAATGTG
CCAGTCCATT TAGGCTCCAT GTCTACGGCC ATCAAATACC AGTTGCAACA CTGGAAGGAT
GATTTGCAAG AAGGTGATAT TTTATGCACG AACTCTCCAA GTGTTGGTGG TACGCATTTA
CCAGATCTAA CTGTTATTTC TCCAGTGTTT ATCGATGGCG TAATCCAGTT TGTTGTTGCA
GCCAGAGCTC ACCACTCAGA AATTGGAGGT TCTGCTCCAG GATCATCTTC ATCGTATGCT
AGGGACATAT ACGAAGAGGG TGCTAATATC GAAGCTTGGA AAATTGTCTC CAATGGAAAG
TTTGATTACC AGGGATTACA GAAACATTTC GTTGATGTTC CAAGAAGTCA TGGTGTTTCC
GGCACCAGAA ATATAGACGA CAACATTTCT GATTTGAAAG CACAAATTGC ATCTAACCAA
AGAGGTATTA ATTTGCTAAA GGATTTGTTT GAAGAATATG GTACTGAAAC AGTTCTATTC
TATATGAAGA ATGTGAAGAA ATCGGCTGAA TTAGCAGTCC GAGACTTCTT GAAGAACTAT
GCTAGTCGGA ACAAGAATAA GCTACCTTTG GTTGCTGAAG ACTATATGGA CGATGGTTGC
AAGATTCAAG TTAAGATTGA CATTGACGAG AAGAACGGTT CAGCTGTCTT CGATTTTTCT
GGCACTTCGT TAGAATCATA CTCCAACCTC AACGCACCAA AATCTATTGC ATATTCGACG
GTTATATATG TTTTAAGATG TTTGGTAAAT TTAGAAATTC CCTTGAACCA AGGGTGTTTG
GATCCTTGTA CTTTGATTAT TCCTGAGAAC AGCTTAATAA ATCCAAGTCG CTTTGCTGCT
GTCTGTGCTG GTAACGGTAT GACTTCACAG AGGTTAACCG ATTGTCTATT CAAAGCTTTT
GGTCTAACAT CTGCTACTGG TGGTTGCATG AACGGAATTA ACTTTGGCAC TGGCGGAGTG
GATGCAAATG GTGACATGAT TAAGGGTTTC GGATATACTG AAACTGTTGG CCAAGGTAGC
TGTGCTGGGA TAGTTGATAC TGATTGTGAA AGGTATGGAT TCAATGGATT CTCGGGAACA
CAAACTAATA TGACCAACAC TAAGATCACC GATCCTGAAG TCTTGGAACA AAGATACCCC
TGTTTGCTTC TTCACTATGG AATTAGGAAG AACTCCGGAG GTAAAGGTAA ATGGAATGGA
GGGGATGGTT TGGTCAGAGA AATCAAATTT ACTTCACCTG TCCATGTTTC ATTGGTGACT
CAACGAAGAG TATATCAACC TTGGGGTATT TATGGTGGAG AATCTGGTGC CAGTGGTAAA
AATTTCTTGG GCAGAGATAG AGGTAATGAT GTTATCCAAT GGATTCAATT GCCATCATTG
GCTGAAATTG AAATAAGAAA GGGGGACATT CTTAAGATCA AGACACCAGG CGGAGGTGGA
TTTGGGAGAC CAGAAGACAC TGATGAATTC TGGGGAATCA CGAATCTGAA AAAGCAACAA
TTCAAGGTCA TGGCTATTAG TGAAGGGTCT CTCGGTAGCA TCAAAGAGGC CTCTAATTCA
TCCCAATAG
|
|---|
| Protein sequence | MTIANLTNVE IAIDRGGTFT DVIYKYREHD VENEETFKLL SVDPANYNDA NIEGIRRVLE
MLTHSTIARG TPLDTSIISS IRLGTTVATN ALLERKGARI ALVTTKGFKD LLHIGDQSRP
NLFALNIVKP GVLYESVVEA EERVTMPAFT GDPTGYDAQD LVDNIHYVRG ETNEVFEILQ
PLDTEKLTAD LLLLRKEGID SIAIVFIHGF NFQKHEKIAG SIARELGFTN VSLSHEILPV
IKTVSRGQST TVDAYLTPIV KEYINNFVSG FKTGFESHTR IEFMQSDGGL CSWNNFTGLR
SLLSGPAGGV VGAAKTCYDA DNQIPVIGFD MGGTSTDISR FAGEYEFSFE SIIAGIKIAA
PQLDINTVAA GGGSILFYRN GTFIVGPESA SAHPGPACYR KGGPLTVTDA NLFTGRIIPE
YFPKIFGPCE NLPLDYEVTK KKFEQLTETI NKENPGATKT PLEIALGFLK VADFQMARPI
RDLTESKGHD VSKHALASFG GAGGQHATSI AKILKIKKIL IHKHSSILSA YGISLSSIVN
EQQEPVSVAY NKLTASSLLD RCNKLKLKSQ KELIDQGVLS KSIDYEVFFN MSYKGSDTRI
MIKQEKDQDF LQSFYTRHQL EFAFNDFEKL VLVTDIRVRA TGSTSVQTEE RSPYKDYDSI
NKIEVDSDLV QKSTDVHFDQ GTLSTKVFFL QTLPIGSVLT GPALVLDSTQ TIVVSPDATA
TILPRHVVID IHTEEKHFIS TDYVDPIQLS IFANRFMSIA DDMSRTLQKI SVSANIKERL
DYSCALFDNK GNLAANAPNV PVHLGSMSTA IKYQLQHWKD DLQEGDILCT NSPSVGGTHL
PDLTVISPVF IDGVIQFVVA ARAHHSEIGG SAPGSSSSYA RDIYEEGANI EAWKIVSNGK
FDYQGLQKHF VDVPRSHGVS GTRNIDDNIS DLKAQIASNQ RGINLLKDLF EEYGTETVLF
YMKNVKKSAE LAVRDFLKNY ASRNKNKLPL VAEDYMDDGC KIQVKIDIDE KNGSAVFDFS
GTSLESYSNL NAPKSIAYST VIYVLRCLVN LEIPLNQGCL DPCTLIIPEN SLINPSRFAA
VCAGNGMTSQ RLTDCLFKAF GLTSATGGCM NGINFGTGGV DANGDMIKGF GYTETVGQGS
CAGIVDTDCE RYGFNGFSGT QTNMTNTKIT DPEVLEQRYP CLLLHYGIRK NSGGKGKWNG
GDGLVREIKF TSPVHVSLVT QRRVYQPWGI YGGESGASGK NFLGRDRGND VIQWIQLPSL
AEIEIRKGDI LKIKTPGGGG FGRPEDTDEF WGITNLKKQQ FKVMAISEGS LGSIKEASNS
SQ
|
|---|
| |