| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_84561 |
|---|
| Symbol | NAG4 |
|---|
| ID | 4839764 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009046 |
|---|
| Strand | + |
|---|
| Start bp | 11203 |
|---|
| End bp | 13155 |
|---|
| Gene Length | 1953 bp |
|---|
| Protein Length | 604 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640391079 |
|---|
| Product | Synaptic vesicle transporter SVOP |
|---|
| Protein accession | XP_001385337 |
|---|
| Protein GI | 126137628 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCCAA ATCATACAAT TAGCGCATCG GAAGATGACG ACTCGAACAC CATTGACAAT
GCCTCTCTCG ACTCCGAAAA GGTGCAATCT TACGGTGATG CCTTGAACAC AGAACAAGAA
CACCAGAACT TGACACCACA CAGGTCTATC AGCAGAATCT TACATTCCAT TAACAGTCGT
GAGTCTGAAG ACAAAGAAGA TAGAGAAGAG TTGAAGAAGT TAATCTCCAA CAACAAGGGT
GTCGAAAGAA TTATTTCTGA ATTGGAAGAA GGTACCGGTA GATTAGGTCC TTTGGAACAG
CCTTACGACT TAAAGAGAAT AACAACCCAG GCTGACCCTA ATAGTGATTT CAATGAAGCC
GATCCCTGGA AATATCCCCT TGATTCAGAA TCGGGATTGA GAATTGTCGA GTTTGTTCCA
AATGACGAAA AGAACCCAAA GAACTTATCT ATAACCACCA AGTGGGTGTA CACTGGTGTA
TTGGGTTTCA TGTGTTTTGT GGTGGCTCTT GGTTCTGCCA TTGTCACGGG TGATTTAGAA
AGACCAGCTG AATACTTTGG AGTAAGTCAA GAAGTCATTA TTTTAGCTTC CGTAACGGTA
TTCGTCATTG GTTTCGGTGT TGGTCCATTA CTTTTCGCAC CAATGTCAGA AGAAGTCGGA
AGAAAGCCTA TATATGCAAC AACTTTGGCT ATTGCTGTTG TTTTCATTGT GCCATGTGGT
GCAGCTAAGA ACATCGGTAC TTTACTTGTT TGCCGGTTGA TCGACGGTAT TGCTTTCAGT
GCTCCAATGA CTCTTATAGG AGGTTCTCTT GCTGATATCT GGGAGGGTAA GGACCGTGGT
ACTGCTATGG CTATTTTTTC TGCTGCTCCT TTCTTGGGTC CCGTTACTGG TCCCATCTTC
GGTGGTCTTT TGGCTGATCA CGCTCCTACC TGGAGATGGA TCTACTGGAC TTTCTTGATT
ATTGCCGGTT TCGTCTATGT CTTGTTCATT TCCATTGTTC CAGAAACCCA TGCTGGTACC
TTGTTGAAGA AGAGAGCTAA GCAGTTGAGA AAGGAAACGG GCGACTCTAG ATACAGATCT
TTTAATGAAT TGAAGATCAG ATCCTTCAGT GAAGTAGCCA AATCTTCGTT GTTGAGACCA
TTCGTCTTGT TAAATGAATT GATTGTCTTC TTAATGACTT TGTACATGTC TGTTGTCTAC
GGTTTATTGT ACATGTTCTT CTTTGCATAC CCAATGGTTT TCCAAGAAGG AAAGGGTTTC
TCTGCATCTT TGACCGGTGT CATGTTTATT CCAATTGGTG CAGGTGTTGG TCTTGCCACT
TTGGCTGCCC CATTCTTCAA CAAAGACTAC AATAAGAGAG CTCAAGTCTA TAGAGACAGA
GGTGAATTAC CACCTGCCGA ATTGAGATTG ATTCCAATGA TGGTTAGTTG TTGGTTCGTT
CCAGCTGGTT TATTTGCCTT TGCCTGGTCT TCTTACCCAA CTATCTCCTG GGCCGGTCCA
TGTTTCTCAG GATTGGGGGT TGGATTCGGT TTCTGTTGTT TGTACAACCC TGCCAACAAC
TACATTGTTG ACTCTTACCA ACATTATGCC GCCTCTGCCT TGGCTGCTAA GACCTTCGTT
AGATCCATCT GGGGTGCTTG CGTTCCACTT TTCACAATTC AAATGTACCA CAGATTAGGT
TTGGAATGGG CCAGTACCTT GATGGCTTTC ATATCGTTGG CTTGTTGTGC TATTCCATTC
TTGTTCTTCA TCTACGGTGC AAGAATCAGA ACGTTCTCTA AGTACGCATA CTCTCCAAAC
ATGGATACCA AGAAAGATGA AGAGAACCAG AAGTAATTAA CTTCCTTCTG AGGTTTCATC
ATTTGCATTT TACAGTGATT TGGTAAGCCT AAATCAATAT TTATTACAGT ACAGACTAGA
TATAATAAAA TAATAATACA TATATACATA TTT
|
|---|
| Protein sequence | MDPNHTISAS EDDDSNTIDN ASLDSEKVQS YGDALNTEQE HQNLTPHRSI SRILHSINSR
EEELKKLISN NKGVERIISE LEEGTGRLGP LEQPYDLKRI TTQADPNSDF NEADPWKYPL
DSESGLRIVE FVPNDEKNPK NLSITTKWVY TGVLGFMCFV VALGSAIVTG DLERPAEYFG
VSQEVIILAS VTVFVIGFGV GPLLFAPMSE EVGRKPIYAT TLAIAVVFIV PCGAAKNIGT
LLVCRLIDGI AFSAPMTLIG GSLADIWEGK DRGTAMAIFS AAPFLGPVTG PIFGGLLADH
APTWRWIYWT FLIIAGFVYV LFISIVPETH AGTLLKKRAK QLRKETGDSR YRSFNELKIR
SFSEVAKSSL LRPFVLLNEL IVFLMTLYMS VVYGLLYMFF FAYPMVFQEG KGFSASLTGV
MFIPIGAGVG LATLAAPFFN KDYNKRAQVY RDRGELPPAE LRLIPMMVSC WFVPAGLFAF
AWSSYPTISW AGPCFSGLGV GFGFCCLYNP ANNYIVDSYQ HYAASALAAK TFVRSIWGAC
VPLFTIQMYH RLGLEWASTL MAFISLACCA IPFLFFIYGA RIRTFSKYAY SPNMDTKKDE
ENQK
|
|---|
| |