| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_83621 |
|---|
| Symbol | AMS1 |
|---|
| ID | 4838667 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009044 |
|---|
| Strand | - |
|---|
| Start bp | 765645 |
|---|
| End bp | 769047 |
|---|
| Gene Length | 3403 bp |
|---|
| Protein Length | 1113 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640389982 |
|---|
| Product | Glycoside hydrolase, family 38 vacuolar alpha mannosidase |
|---|
| Protein accession | XP_001384447 |
|---|
| Protein GI | 150865295 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0383] Alpha-mannosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTACG ACCGTACAAA CCACCAACCC AATTTCAAGC CTGTTGACCA CCTCTTTGAT
GACAGACTTC GTCAGTTCAC TAATACTGGA GGCGAATTTG TCGACTTGAA TCTTCCCAAA
TTCTACACTT TGGAGTCTCG TGAAATTCCC AACTTGCAAT CCTACAGAGT GCCAGATGTA
GACGGAAAAA CTGCTCGTCC CTTGTTCAAG GATATCGACT TTGACAATGT CAACTGGGAA
CATATTGGTA TCGGCTACCA ATTCGGTCCA TCTTGGAAAT CGTTCTGGGT CAAGTTTGAA
GTAGAAATTC CAGAAGATTG GCTCAAACAT GAGATTATCG AATTGGAATG GGATCTGAGT
TCCGAGGCCA TGATCTTGAA CGAAAAGGGT TTTCCTCTCC AGGCATTCAC GGGAGGTGAA
AGAAACCTAT TCAGATTCCC TGACGAATAC AGAACATCCC AAAAGCAGAC TTTCTTTATT
GAAGTAGCTT GTAATGGAAT GTTTGGTAAC GGTGCCGGAG GACATCCGGA TCCCAACAGA
CACTTCCGCT TAAATAGAGC CCATATCCAG ATTCCCAACA TGGAAGCTAG ACGGTTGTTC
TGGGACTTCT GGATTCTTGG AGACGCTGCC CGTGAATTCC CTGGTGGAAA CTGGCAGAAG
TACCAAGCAG CAGATATTTG TACGAAGATC ATGGACGTCT TTGACCCTGA AGACGTTTCC
TCTATAGCCA AAGGCCGTAA GCTTGCCGAA ACCTTATTGG GTTCGAAGGT GAACTCGGAA
CTGGTGTATG ACCAATACGC TAACACCGAG TTGAAGCGCA TTGATGTATT TGGCATTGGA
AACTGCCATA TCGATACAGC CTGGGAATGG CCATTTGCCG AAACCAAGCG TAAGATCGTT
AGATCCTGGA CTACGCAGTT GAAGTTGGCT GACGAATATC CCGAGTATGT ATTTGTAGCT
TCTCAGATGC AACAGTTCAA GTGGTTGAAG ACGTACCATC CAGAAACTTT TCAAAAAGTC
AAGGAAAAGT ATGCCACCAA CCAGTTCTTG CCCATTGGAG GGTCGTGGGT CGAAAACGAT
ACAAACTTGC CCAATGGAGA ATCTCTCATC CGTCAGTTCT TGTTGGGGCA GAGATTCCAG
CATAACGAGT TTGGATTCTA CTCCAACATC TTCTGGTTGC CTGATACTTT CGGCTACTCT
TCCCAGGTGC CTCAGATCTG CCAGCTAGTG GGAATCAGCC GTTTCTTGAC CCAGAAGTTG
TCATGGAACA ACATCAATCT GTTTCCAATG TCAACCTTCA ACTGGAAGGG TATCGACGGG
ACTCAGGTGT TGACCCATAT GCCTCCTGCA AACACCTATA CGGCTGGAGC CAACTTTGGA
GATGTAGTCA GATCGCAGCA TCAACATAAA AACTTGCGCG ATGTGCCAGT CGGCCTTTTG
TTGTTTGGCC ATGGTGATGG AGGAGGTGGT CCAACAGAAG AAATGCTTGA GAAATTGAGA
AGATGTAGAG GATTGGCCAA CACTTCTGGC TTGATCCCTA CTGTTCATTT AGGAAAAACT
GTAGACGACT TTTACGAGCA TGTTTTGGCG AAATCGAACA ATGGTGCTGA TTTGCCCACC
TGGCTGAGCG AAATGTACTT GGAATACCAC CGTGGTACCT ATACGACTCA AGCGAAGGTG
AAGAAGTTCA TTAGAACAGG CGAAATCAAG TTGCACGACT TGGAATTGCT TGCTGGTTTA
GTCTCTGTAG CCTCATCCAA GTACAAGTAT CCCAGCAAGG AAATCAAGGA TCTCTGGGAA
GACTTGTGTC TTTGCCAGTT CCATGATGTC ATTCCTGGAA GTTGTATTGG TATGGTTTAC
TACGACGAAG TTTATCCTAT GTTGACTGCA TTGCTTGAAA AAGCAGACAA GTTGATTGAT
GAGGCTATCA CGTTCTTGAC CGATTCCAGT TATGAGAAGA ATGTGGGAGA TTTAGCTTTT
TTCAACACGT TGCCATGGAA GAGAAGTGGT GAATTGATCC ATATTTCTAA TGAAAACAAA
GAGCTATATG AGTTATTACA GAACACTGAG TTCAGTGTCA AACATAGCTC TGACAAGTTG
TTGATCAGTG TCAGTTCTGA CGAAGACGGT TTGACCAAAT TGAACCCTGT TGATTCGCTT
GCTTATCCAG CTTCACTTTT GAAGACTCGT AGTGGCAAAT ACATTCTTTC TAACGGTCTC
TTGAAGGCTA CCATTTCTGC CAATGGTGTT ATCACTTCGT TGTACGACGT CAAGAACGAT
CGTGAAGTGA TTGACTCCAC TGCTACGAAG CAGACTGCTG GAGAGGGTGG AGAAGTTGGT
GGTAATCAGT TCATAGTATT TGATGACGAA CCTTTGAACT ACTCGGCTTG GGACACTGAG
TTATATTCTT TGAACAAGTT TAAGTTCTTG AAAGGTGGAG AAATCACAAT TTTGAGCAAC
ACTCCTTTGG AGAGCTCGAT CTTGGTGAAG CATGACATTT CGGCTCACTC TTCAATCGAG
ACGATTATCT CCATCCAGGG TCTTGACAGT GCTGACGATG TCAGCAACAA CTACATCAAG
TTTAGCTCGC ATGTCAAGTG GCACGAAAAG TACAAGTTCT TGAAGGTTCA GTTCCCCACT
ACCATCAACA GTGCTCTTAA TGCCAACTAT GAGACTCAGT TCGGAATAAC ACAAAGACCC
ACACACTGGA ACACATCATG GGATGTAGCC CGGTTCGAAG TGGCTCACCA CAAGTTCATG
GACTTGAGCG AGTACAACTA CGGTGTTTCC ATCTTGAACA ATTGTAAGTA CGGAGGTGCC
ATCCACGGTA ATTTGATCCG CTTGTCATTG TTGAGAAGTG CCAAATCTCC GGACGACTTG
GCTGATATGA GTGATGACCA TGTATTTGAA TACGCCATTT ATCCCCACAA GGGTGCCTTG
GGTGCAGACA CCGTAAAGTT GGGCTGGAAC TTCAACTACC GTATCGAGAA GGCTCTTATT
GACCCTAAGA AGCAGTTGGC TCGTCTACTT GGTGCTGTAA AGTTGGAAGG TGGTGATAGT
TTGATTTTAT CCCATATCAA ACGAGGCGAG AACGACGAAG ACGTCAACGA CATGGAACAC
ATCAAGTCTG AGGGCAAGTC GCTTGTCCTT AGAGTCTACG AGTCGTTGGG TGGAGCTACG
AGTGGTGTGT TGAAGTTCGA CACAAGCGTG TTGAAGATTG CTAAAGTGTT CAAGACCAAT
GCGTTGGAAG ACGAAACTGA TCCAGCCGTG GGTGCTGAAT TGAAGGTCAA CGACAAGGGC
GAGTTGCCTA TCAAGTTGAG AGCATTTGAG ATTGCTACAT TTAAGGTTGT TTTGAATTAA
AAAAATTGTT AGTTATGTTA GTTATGTTTA TCAATATTTT CCT
|
|---|
| Protein sequence | MSYDRTNHQP NFKPVDHLFD DRLRQFTNTG GEFVDLNLPK FYTLESREIP NLQSYRVPDV
DGKTARPLFK DIDFDNVNWE HIGIGYQFGP SWKSFWVKFE VEIPEDWLKH EIIELEWDSS
SEAMILNEKG FPLQAFTGGE RNLFRFPDEY RTSQKQTFFI EVACNGMFGN GAGGHPDPNR
HFRLNRAHIQ IPNMEARRLF WDFWILGDAA REFPGGNWQK YQAADICTKI MDVFDPEDVS
SIAKGRKLAE TLLGSKVNSE SVYDQYANTE LKRIDVFGIG NCHIDTAWEW PFAETKRKIV
RSWTTQLKLA DEYPEYVFVA SQMQQFKWLK TYHPETFQKV KEKYATNQFL PIGGSWVEND
TNLPNGESLI RQFLLGQRFQ HNEFGFYSNI FWLPDTFGYS SQVPQICQLV GISRFLTQKL
SWNNINSFPM STFNWKGIDG TQVLTHMPPA NTYTAGANFG DVVRSQHQHK NLRDVPVGLL
LFGHGDGGGG PTEEMLEKLR RCRGLANTSG LIPTVHLGKT VDDFYEHVLA KSNNGADLPT
WSSEMYLEYH RGTYTTQAKV KKFIRTGEIK LHDLELLAGL VSVASSKYKY PSKEIKDLWE
DLCLCQFHDV IPGSCIGMVY YDEVYPMLTA LLEKADKLID EAITFLTDSS YEKNVGDLAF
FNTLPWKRSG ELIHISNENK ELYELLQNTE FSVKHSSDKL LISVSSDEDG LTKLNPVDSL
AYPASLLKTR SGKYILSNGL LKATISANGV ITSLYDVKND REVIDSTATK QTAGEGGEVG
GNQFIVFDDE PLNYSAWDTE LYSLNKFKFL KGGEITILSN TPLESSILVK HDISAHSSIE
TIISIQGLDS ADDVSNNYIK FSSHVKWHEK YKFLKVQFPT TINSALNANY ETQFGITQRP
THWNTSWDVA RFEVAHHKFM DLSEYNYGVS ILNNCKYGGA IHGNLIRLSL LRSAKSPDDL
ADMSDDHVFE YAIYPHKGAL GADTVKLGWN FNYRIEKALI DPKKQLARLL GAVKLEGGDS
LILSHIKRGE NDEDVNDMEH IKSEGKSLVL RVYESLGGAT SGVLKFDTSV LKIAKVFKTN
ALEDETDPAV NDKGELPIKL RAFEIATFKV VLN
|
|---|
| |