| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_81443 |
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| Symbol | SFB3 |
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| ID | 4836733 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | - |
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| Start bp | 413622 |
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| End bp | 416681 |
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| Gene Length | 3060 bp |
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| Protein Length | 939 aa |
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| Translation table | 12 |
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| GC content | 43% |
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| IMG OID | 640388048 |
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| Product | sec-24-like membrane protein involved in ER to Golgi vesicular transport |
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| Protein accession | XP_001382842 |
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| Protein GI | 150864135 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5028] Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.181556 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | AGAAAGAAGA AAAAGCGTCC AGCCAGAGCT TTCCATACCG AATTCAATTC CTTACCTGCT
TCTTCAGCAG CTACACCTAT GGCATCGGTG GCAGCATCGC CTACTAATTC TCATGCTGCT
CTTTACACTG CGCTGTATAA CAACAGTCAG CAAAACCAGA TCTACCAGCA GAATCCGTTC
CAGCCACTGC AAAACCAAAA TCCATACCAA TCTAATCAGA ACTTTCCGAA TACTAACAAT
GTCAACAATA CTGCAACAAA CAACTTAGCA GCAAACGGTT TTGCTGCAAA TGATATCCCC
ATCAACCAAT CACATTTCGA TCAGCACCTC TCTTCTGCTC CTGTGCCAAA AGTGTTACGC
GATATGAACC ATTTATCTCA GGAAAACGAG GATCTCTCCT TGCAACAACA CAGATACGCT
AACCAAGTGG AGTACACGTC TGCAAATGAT GCTGGCGAGT TCCGTTCGTT TTACACATTT
CAAAATGTGC TGCCTCCTGA AGCGACTTCC CAATTCCATG CTGTAGACCA AGGCACATCA
CTGTCGAAGT TCATCCGTTC TACCATGTAC TATGTTCCCG AATCTGAACT GTTGCGTGCG
GCTACAAAGT TGCCTATTTC TGTCACCATC AGACCGTTTG CGCCTTTACT TGCTTCGGAA
GAGCCTGTCC CTCTTGTAGA CATGAAACGC GACGACATCG GAGCCAATGA CGATCCGCTC
AGTAAAGGTC CGATCAGGTG TCGTCGCTGT AGAACCTACG TGAACCCTTC ATTTCAGTTC
ACTAATGATG GCAAGTTTAT GTGTAACATC TGTCAGTTTC CAAACAACGT AGTTCCTGAC
GACTACGCTT CGGTTTTGGA TGGACAGGGT TACAGAATCG ACAGATTGTC TCGGCCAGAA
TTGCACAAAG GTGTCTATGA CCTCTTGGTT CCTGACGAAT ACAACTTCGG TGGCCCCGAA
GTGCATTCGC AGCCCTTGCA TCACATCTTC TTGATCGATA TTAGTGAACA GAGTGTCAAA
CAGAATTTGC CAGTTATCAT AGCTGATGCC ATAAGGGCCA CCTTGTATAC TGATGATTAT
GTAGAACACT ATCCGGAGGA CTTAGATAAC TACGATCCAA ACGAGCCAGA AACACCGAAC
AAGAGGGTCA AGCAAAAGTT TGCTTTCATT GCTTTCGACA AAAGCTTGCA TTTCTTCAAC
TTATCACCAA CTCTAGAATC GACTCAGGTA GTGATCTCTT CTGACCTTGA AGATCCATTT
GTTCCATTCA GTGAAGGCAT GTTTGTAGAT GCTGAGGAAA GCAAGAACGT CATAGAAGAT
GCCTTGAACC AATTGGAGCT GTTTTGTTCG CAAGAAACAG TGGCTGATTC CGAAACCTGT
TTTCTAGCCG CCTGTAGAAC TGCCATGTTG TGTCTTGAGG CAGTGGGTGG AGGTAAAATC
ACGTCCATTC TCTCCACTCT TCCAACTTGG GGCCCAGGTG CCTTGAAGTA CAAGGACAAC
AAGAATGTAG GTCGTTCTCC GGCACCATTG ATGGAGAAGA GATTGTATTC CGTTGATAAT
GAGTATATCA AACTCTTGGG AAGAGACTTT GTGGAGAAGA ATGTAGGACT TGATGTTCAT
GTGATTTCTC CAACTTCTGT CGACTTGTCT AACATAGGCT GGCTCTCGTC TATCACCGGT
GGAACTATCA GCAGATCGTC CAATTTCAAC TTTGAACGGG ATGGTAGATC CTTGACAGCT
AAGATAATCA ATTCTATCAA GAAAGCCTCT GGTTATCAGG GTCAGTTAAA ATTACGTTGT
TCCAATGGAT TGCAAGTTTC TCAGTACTAT GGCACCTCTT CGTCTATTGC TGATACCTCT
GTAGTTGGAA GTGTCCAAGA CCCAGTGATT CCTGTTCTTA ACGAAGACCA GACTTTTACT
ATCTTGCTTG AATACGATGG TAAACTCAGC ACAAAGTTGG ACTGTCACTT TCAAGCAGCT
TTGTTGTACA CTGATCCTGA TGGTGTCAGA AAGGTCAGAG TTATTAACTT GGTTGTAGCA
GTCACCGAGA GGTTAGAAGA TGCGTTTAAC TTCGCGGATG AGAACGCAAT TGTTACTACC
ATTGTGAGAG ACACCTTGTC ATTTGTAGGG AAACAGCCCT TAACTGAGTT GCGTGAGTCT
GTTAACTCCA AATTGGTAGA GATCTTCACC CAGTACAGAG CTATGTCTGA ATATGGACAT
AACACTACAA GAACCTTGAC TAACCAGTTG TTGTTTCCGG ACTCACTAGT GCATCTTCCT
ATCTACTTAC TTGCGTTTAT CAAATCCAAA GCTATTAGAG ACTCTACCGC TATTTCTTCT
GATGTCAGAC TTGCTGATTT GTACCAAATG CTTAGTATGC CCATCGAGAG ATTAATGTAC
CTCTTGTATC CAGCTTTAAT CGAATTGCAT TCTATTTCTG AGGAGGAGGC AGAATTTGAA
CCAACCAATG GTTTCTTCTC TTTGCCCAAG TCCAAAGAAG TCTCCGCTAG TCACCTCCAA
AAGGGTGTAT ACATCTTGTG TGATGGTATG AAGGTATATG TCTGGGTTCA TCCAGAGTCT
AACATGATGC TTGTCAAAGA CTTGTTTGGG GACCAAGTAG AATCTGTCGA GGAACTTAAC
CCGCTCATTG ACGAGTTGCC CGAGTTACCT ACTCACATTT CAGAACAAGC TCGCAACATT
GTCAAGTATT TCCAGACTTA TATTGTTGGA GATTCATCTT TAGAAAGTGC TGGCATCCGT
TTGGTCCGTC CTGGAATTGA TGGCGTAGAA CATGAGTTCA GGGAATTGCT TGTAGAAGAC
AGTTTAAGAG GTAGTATGGC CACCAACAGC AGTCTTGGCT ATCCTGAGTA CTTGAGTAAC
TTGCATAAGG CCATTAGAGT CAAATTGGAT AACGATTCGT CTTCTAACAA GGTAAAGCAA
TCGGTTACTA ATGCTGAGAA TCATCATGAT ACCCTCGCAC AAAGATTAAT CCATTTTTAA
AATTGTGTAT AATATGTATA GTACTACTTA AAACGCACCA TCTTAATGAC TTCAATAAGT
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| Protein sequence | MASVAASPTN SHAALYTASY NNSQQNQIYQ QNPFQPSQNQ NPYQSNQNFP NTNNHLSSAP
VPKVLRDMNH LSQENEDLSL QQHRYANQVE YTSANDAGEF RSFYTFQNVS PPEATSQFHA
VDQGTSSSKF IRSTMYYVPE SESLRAATKL PISVTIRPFA PLLASEEPVP LVDMKRDDIG
ANDDPLSKGP IRCRRCRTYV NPSFQFTNDG KFMCNICQFP NNVVPDDYAS VLDGQGYRID
RLSRPELHKG VYDLLVPDEY NFGGPEVHSQ PLHHIFLIDI SEQSVKQNLP VIIADAIRAT
LYTDDYDLDN YDPNEPETPN KRVKQKFAFI AFDKSLHFFN LSPTLESTQV VISSDLEDPF
VPFSEGMFVD AEESKNVIED ALNQLESFCS QETVADSETC FLAACRTAML CLEAVGGGKI
TSILSTLPTW GPGALKYKDN KNVGRSPAPL MEKRLYSVDN EYIKLLGRDF VEKNVGLDVH
VISPTSVDLS NIGWLSSITG GTISRSSNFN FERDGRSLTA KIINSIKKAS GYQGQLKLRC
SNGLQVSQYY GTSSSIADTS VVGSVQDPVI PVLNEDQTFT ILLEYDGKLS TKLDCHFQAA
LLYTDPDGVR KVRVINLVVA VTERLEDAFN FADENAIVTT IVRDTLSFVG KQPLTELRES
VNSKLVEIFT QYRAMSEYGH NTTRTLTNQL LFPDSLVHLP IYLLAFIKSK AIRDSTAISS
DVRLADLYQM LSMPIERLMY LLYPALIELH SISEEEAEFE PTNGFFSLPK SKEVSASHLQ
KGVYILCDGM KVYVWVHPES NMMLVKDLFG DQVESVEELN PLIDELPELP THISEQARNI
VKYFQTYIVG DSSLESAGIR LVRPGIDGVE HEFRELLVED SLRGSMATNS SLGYPEYLSN
LHKAIRVKLD NDSSSNKVKQ SVTNAENHHD TLAQRLIHF
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