Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_80500 |
Symbol | VPS29 |
ID | 4850972 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009068 |
Strand | + |
Start bp | 597943 |
End bp | 599146 |
Gene Length | 1204 bp |
Protein Length | 249 aa |
Translation table | |
GC content | 39% |
IMG OID | 640392680 |
Product | protein involved in endosome to golgi protein transport |
Protein accession | XP_001387345 |
Protein GI | 126273933 |
COG category | [R] General function prediction only |
COG ID | [COG0622] Predicted phosphoesterase |
TIGRFAM ID | [TIGR00040] phosphoesterase, MJ0936 family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0205498 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | CTTTATCTCA TTCTTCATGC TTACATTAGC CATTGGTGAT CTCTACATTC CTGAGCGAGC TCTCGATTTG CCGGCCAAAT TCCGCAAGTT GTTGTGCCCC AATCCTCAAA GTATCCCTAC CAATAGTAAA ATATCTGAGG TGATATGTCT TGGGAACATC ACCAATTCTG TTGATACGTT GAAGTTTTTG CATGATTTAT CACCTTCGTT GCATTTAGTG AAAGGTGAGT TTGACGACTT GCCAATATTG TCACAGCAGT TGTCGCTGGT GAGCAAGAAA GATGAGAATG TTGGTATATA TGGGGTAATA ACTCATGATA ACTTGAGAAT CGGATTCACC AACGGCTACC AGGTAGTACC CAAGAACGAC CCGTTGGCAT TGCTGACGTT GGCGAGAGAA TTGGATGTAG ATGTATTGAT TTGGGGAGGA ACTCACAAAG TAGAAGCATA TACCTTAGAT GGCAAGTTCT TCGTGAATCC TGGAAGCGGA ACGGGTGCTT TCAGTTTTGA TTGGCCCGAA TGGTACGAAG AAGAAGAGAA CGCAAAGGAA GAAGAAATAA AGGAAAATGA AGACGAGGCA AAGCCAGAAG TAAACGAGGA AGAAAAAGAA GAACCTACTG TGGAAACGAA AGAAGAAAAG AAAGATGAAA CTGAGGATGT AGAAAAGAAA GACGCAGAAG TTACAGAAGT TTCAGAAAAC AAAGCAAATC TATTCGATGA AGGACAAACG GAAACTGATG CACAAGATAC ACATGGTGAT CCTTTACTGG ATACCAGGGC CAATGTAATA GACGAACACA TCTTAAGTGA AGTTACCGAG CTCAATGCCA TAGTTCCGTC TTTCTGTCTT CTTGATACTT TTGGATCTAC TTGTACTTTG TATATCTACA CACATTTGAA CGGCGAGGTT AAAGTGGACA AAGTGTCCTA CACTAAGGAA TAAGATGCTT GCACAACGAA TTCCGGGTAC TAGTGTTGTA AATGCCTAAA ACTATTTACG CAACTATTAT AACATTGTGG GCATACACTA TCAATACAAT ACCTGAGATA GAGTTAATTT TGAGTATTCA CTCAGAAAGA AATTTACAGG TAGTTGCTTC TAAGATATCA AGTTCTATGA ATTCTTCGTT CCTTCATGAG TAGTCATGGT GATAATACTA TAATATATAC ATTACAAGTA AAAATACAGT GGCAGCAATC ATCT
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Protein sequence | MLTLAIGDLY IPERALDLPA KFRKLLCPNP QSIPTNSKIS EVICLGNITN SVDTLKFLHD LSPSLHLVKG EFDDLPILSQ QLSLVSKKDE NVGIYGVITH DNLRIGFTNG YQVVPKNDPL ALLTLARELD VDVLIWGGTH KVEAYTLDGK FFVNPGSGTG AFSFDWPEWY EEEENAKEEE IKENEDEAKP EKLQKANVID EHILSEVTEL NAIVPSFCLL DTFGSTCTLY IYTHLNGEVK VDKVSYTKE
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