| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_78175 |
|---|
| Symbol | |
|---|
| ID | 4839399 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009045 |
|---|
| Strand | + |
|---|
| Start bp | 332594 |
|---|
| End bp | 334581 |
|---|
| Gene Length | 1988 bp |
|---|
| Protein Length | 584 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640390714 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001384723 |
|---|
| Protein GI | 150865487 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.586636 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCCAT ATCAATATGG CTGGTAAACA CAAGAAGCTC ACCTTCAAGG AGCAGATGCA
GGGGTTCCCT GTGAGACAAA TGTTCATTAT CAGTATCATC CGTTTCTCGG AACCCTTGGC
TTTCACGTCT CTTTTCCCAT ACTTGTATTT CATGATTCGT GATTTCCACA TCGCAGAACG
TGAGGAGGAT ATCTCCAAGT ACAGTGGGTA CCTTGCATCA TCGTTCGCCT TCTGCCAGTT
CCTCTTTGCT GTCAGATGGG GGAAACTCAG TGATCGTATA GGTAGAAAGA TCATCTTGTT
GATAGGCTTG TTTGGTACTT CACTCTCGTT GATTTGTTTT GGATTCAGTC AGACTTATTG
GACAGCATTA ATATCGCGTA GTTTGGCTGG TGTTTTGAAC GGAAACGTCG CGGTTTTGAG
AACGATGATT GGGGAAATCG CTACGGAAAG AAGACACCAA GCCTTGGCTT TCTCGACACT
TCCACTCTTG TTCAATTTCG GTAGTATCAT AGGTCCAGCC ATTGGAGGTT CCAAGTACTT
GACCCATCCT CGCAAGGAAA ACCCGTACCA CCCAGGGGAA ACTATGGCAT TGTTAGAAGA
AGGACTTTCG TTTTACGAGC GTTTCATCAG GAAGTATCCT TATGCCTTGT CCAACATTGT
AGTGAGTTGC TTCTTATGGT TCTCTTTAAT TTGTGGATTT TTGTTTCTTG AAGAGACCCA
TGAAGTTTGC AAGTACAGAA GGGATTACGG AGTAGATTTG GGGGACTGGT TGTTGTTGAA
ATTGGGCTTC CATCCACCGG TCAGACCATG GCACCATCAT AAACACACTA GTGCTGAAGC
ACAAATAGCT TCTGAAAGCT CTCCTTTATT AGGAAATTCC AGTCTGGATA ACAACCAAGA
TAATGCCTCT ATTTCTTCAG AAACTGTTGA TGAAGACGAT GATGATGATA TCCAAAGTGT
CCGTCCTTAT ATCTCTAGAA GAATGTCACA GGCTATTGTA AAGACTTACT CCATGAGTGA
ACACGAAATT GAGGTACATA GACCTTCTTA CGCTAATGCC TTCACATCCC GAGTAATCAC
GGTCATCACA GGAAATTTCA TCATCTCTTT ACATAACGTC ACCTACAACG AATTCTTGCC
AGTTTTTTTG GCATCTAGAT TCCGTAAAGA CGGGCTCAAA TTTCCGTTCA GAATAGAAGG
TGGATTTGGT CTTGATGTCA GTTACATTGG TACTTTGTTT TCTTCTACAG GTATCATGGG
AATGTTAATT GTCCTTCTAA TCTTCCCCAT GATCGACCGT AACCTTGGAA CCATTAACGG
GTATAGATTG TCAGTATCAA TCTTCCCATT CGTCTACTTC ATGGTACCCT TAGCCATCTT
TACTTTGCAC GACTACAACC CAGCCTTCCC CAAGTGGGTT ACCCCAGTTA TACTATACAC
GTTCACGTCA TTGAAGACGT TGGCTAGTGC AACAGGGATG CCTCAGGTTA TGCTCTTGAA
CCACCGTGCT GCTGCCAAGG AACACCGTGC CTATGTGAAC AGTGCTACTA TGAGTATTAT
TGCTCTTGCC AGGTGTACTG GTCCGATTGT GTTTGGTTAC TTGATGTCTC TAGGTGACAA
GCTTTCTACT GGGGAATTGA TCTGGTGGGT TATGTCTTTG CTTGCCGGAT TTGGAATGAT
CCAGTCTTAC TGGATGGAAG ATTACGACGA CGATGAAGAT GAAAAAGTTC AACCTGAGCC
GGCTGCCGAT CTCTTCGAAG CAGAAGCCTT GGGTGAAGAA GACATGCAAC AAGACTTCAC
TACAATAGAG GTTTCTGATA ACGAGCAGTC TAGCTTGTCT ACCAATTAGA GAACATATCT
AAAATGATAA TTCAAAAAAC TTAATTGACA TATTGAATAT GTGCATCGAA AGGAACTCTT
CAAATATCAT AGAATTGTCT ATATCCATAT ATATTAGAAA CATATAGAAA CGTACGGAGT
TACCCTTC
|
|---|
| Protein sequence | MAGKHKKLTF KEQMQGFPVR QMFIISIIRF SEPLAFTSLF PYLYFMIRDF HIAEREEDIS
KYSGYLASSF AFCQFLFAVR WGKLSDRIGR KIILLIGLFG TSLSLICFGF SQTYWTALIS
RSLAGVLNGN VAVLRTMIGE IATERRHQAL AFSTLPLLFN FGSIIGPAIG GSKYLTHPRK
ENPYHPGETM ALLEEGLSFY ERFIRKYPYA LSNIVVSCFL WFSLICGFLF LEETHEVCKY
RRDYGVDLGD WLLLKLGFHP PVRPWHHHKH TRNSSSDNNQ DNASISSETV DEDDDDDIQS
VRPYISRRMS QAIVHRPSYA NAFTSRVITV ITGNFIISLH NVTYNEFLPV FLASRFRKDG
LKFPFRIEGG FGLDVSYIGT LFSSTGIMGM LIVLLIFPMI DRNLGTINGY RLSVSIFPFV
YFMVPLAIFT LHDYNPAFPK WVTPVILYTF TSLKTLASAT GMPQVMLLNH RAAAKEHRAY
VNSATMSIIA LARCTGPIVF GYLMSLGDKL STGELIWWVM SLLAGFGMIQ SYWMEDYDDD
EDEKVQPEPA ADLFEAEALG EEDMQQDFTT IEVSDNEQSS LSTN
|
|---|
| |