Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_77171 |
Symbol | |
ID | 4838353 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009043 |
Strand | - |
Start bp | 1243736 |
End bp | 1246537 |
Gene Length | 2802 bp |
Protein Length | 907 aa |
Translation table | 12 |
GC content | 44% |
IMG OID | 640389668 |
Product | predicted protein |
Protein accession | XP_001383871 |
Protein GI | 150864873 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0403806 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | CCTGAAAAAT AACATTAAAT AAACAATTGC TATGTCCTTG TTTGTAGCCA AAGTCAAGAA TGTGTTGAGC GGTGACACCG TGGTGCTTGT TCCCTCGAAA ACGGCACAAT TTCCAGCTCC AGAAAGAGTC TTGACTCTCT CTTACGTCAG AGCCAACGAC TCTTTTGCTG CCAAGGAGTA CTTGAGAAAC TTGTTGATTG GCAAGGAGAT AAAGTTCAAG GTCAACTACA AGAACCCTCA AACCGGTCGT GAGTTTGGTG ACGTCCAGGC TCCTATTTTC AAGTCTTTGA TCCAGTACCT CTTGGAAAAG GGTTTGGTCA AGTTGAAGGA TAACTTCCTG GAAAACGACG GGGACATTTA TTACGACTTG AAGGAAGTCG AGAACAGTGC CAAATTGAAC AACTTGGGCG TGTGGAACAC CACCAGTTCA GAAAATATTG AACTTGTATC TCTTACTGAA AACATCATCA ACAAGTCACA GAAGTACCCG ATCAAGGCCA TTGTAGAAAA AGTCATCAGT GGTGACAGAG TTGTGGCTCG TATCATCGTC AAGGAAAACC AACACGTTTC CACTGCGTTG TTGTTGGCTG GTATCAAGGC TCCGAGAACC GATGACGTTA ACCAACCTGC TGCTACCACC AAAGTAGCCC AACAGGCTAA AGCCTTTGTG GAAGACAAGC TCTTGACAAC CAAGGCCGAA TTGACTGTTT CCATTGTAGG TGAGTCTCAG ACAGGGGTTC CAATAGCTTT AATTCACCAT TCCTCTGGCA ACAACATTCA CGAGAAGTTG TTGGAACAGG GCCTTGGAGA AATTGTAGAC TGGCAATCGA CCATGATTGG CTCTTCTGCA ATGGGAGGCT TGAGAAGAGC AGAGCAAACG GCTAAAGCTT TAGGTAAAGG TTTGTATGCC AATTCTACTC GTCCATCAGG CGGTTCCACT GCTGGTTCAG GTGTTTCCAG CAAGTCGTTA AAGCCTGGCT CCACTATTGA GAATGTTCAG ATTGCCAAGG TTGTCAATGC GGATACTTTG GTTATCCGTT TGCCTCATTC TGAAGAAGAG TTGACAGTGC AACTTGCTTC TATTAGAGGC CCCAGACCAA ACGACACTAC TATCACTTCA GACCACCAAA AACAACAGGC TCTTGTTTCT ACAGCCCGTG AATTTGTCAG ACATCAAGTT ATTGGCAAGA CTGGTACTAT CTTCATCGAT GGTTACAGAA ACGAGAATAA AGAGTTGGGT TTTGACGCTA GATTTTTGGT TAGCTTCAAG TACAACAATA ATATCGACTT GTCCGAAACG CTTGTACAAA ACGGTTGGGC TACTGTCATC AGACATAACA AGGCTACTTC CCATGAGAGA TCATTGAACT GGGACAGATT GATTGAGATC GAAGAAGAAC AGAAGAAGCA GGCTAAAAAG GGTTTGTTCA CAAGCGGTGA CATCACCAAG GTGTTAACCG TAGGCACAAG AGTTATTGAT GCTTCCGAGA ACTTTGCAAA AGCCAAGACA TTCTTCAATG GGTTCAAGCA GAAGGGCAGA ATTTCTGGCT ACTACGTCGA ATTCGTGCCT TCTATCAATA GAGTCAAGTT ATTCAACCCT AAGGAAGGGT TGAAATTGAC GTTGATCTTG GGTGGTTTGA CCAACGAAAG ATCTGAAGCT TTGGGAGAGC AAGGTGTCAA ATTTTTGAAC AAAAAGTTCT TGCAGAGAGC CGTAGAGTTC GATATCTACG ATACCGACAA GATCGGTTCT TTCATTGGTA ACTTGTACGC ATCCAACAAC AGTTTGTCTC CTGTACAAGT CAATTTATTG GAACAGGGTT TGACCAAGAC CCACGAAATA GCCATCAATG CCAATTCGTT TGCTGGTGAA TTGATCAAGG CCGAGGAATC TGCTCAATCA TCCAAAAAGG GTGTCTGGGC TGGCTATGAT CCAGCAAAGG CTAAGGCTGA GTTGGACCAG ACTGCTGCTA AGCTCAACGA ATTGAACTTG GAATCGTTGA AGCCAAAGTT CTTCGATGTT GAAATCGTAG ATGTAGACAA CACTGGTGTT GTTTCGTTCC ACCATTTGGA CGGAGCCACT GTTGCCAAGT TTGGCGATTT CAAGAAAAAG TTTAACGACT TCCATCTCAA GCTCCCCAGC GCTAGCACTC AATCTGTAGA TTTGCCTCAC AACTTAACCA AGGCTCCTAA GAAGGGTGAG TTAGTCAGTG CAAAATTTGC TGAAAACAGC AAGTACTACA GAGCCAAGGT CGTCAACTTT GACAAGGCTT CCAACAAGTA CGAAGTCAAG CACTTGGATT TCGGCAACGT GGACAAGGTT CCTTTGAATT CCTTGCGTTT GTTGCCTGCC CAGTTCAACT TGCAGGCTTT TCCTGTTTTC GCTCACACGG CTACGTTACA GAACTTGAGA TTACCTCCTA AGACTCCTAC TGATTACTTA ACTGATGCCT TGTATGCGTT GGAAGACTTA ACGTTTGAGA AGAAGTTGGT GATCAGTGCT TTGCCATCTT CGAACCCAAG CGTGGAATAT GAAGGTATTT TCTATGATGC CGAAGAGTCG TTGAAGGACT CTACCTACAC CATTAACAAG CAATTGGTCA GTGAAGGTTG GGCCATTGTA GACACCAAGA ACGTTAAGCC ACCTGTCAAG GACTATGTCA ACGAGTTAGT AACTGTTCAG AACAAGGCCA AGTCGCAGCA TTCGGGATGC TGGGAGTTTG GAGATGTGTC TTTTGATGAC GAGGACACTT TCTAACATTG TAGGATTACG AAAAGTTAAT AAAAATTCGA TCGTTTACTG TG
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Protein sequence | MSLFVAKVKN VLSGDTVVLV PSKTAQFPAP ERVLTLSYVR ANDSFAAKEY LRNLLIGKEI KFKVNYKNPQ TGREFGDVQA PIFKSLIQYL LEKGLVKLKD NFSENDGDIY YDLKEVENSA KLNNLGVWNT TSSENIELVS LTENIINKSQ KYPIKAIVEK VISGDRVVAR IIVKENQHVS TALLLAGIKA PRTDDVNQPA ATTKVAQQAK AFVEDKLLTT KAELTVSIVG ESQTGVPIAL IHHSSGNNIH EKLLEQGLGE IVDWQSTMIG SSAMGGLRRA EQTAKALGKG LYANSTRPSG GSTAGSGVSS KSLKPGSTIE NVQIAKVVNA DTLVIRLPHS EEELTVQLAS IRGPRPNDTT ITSDHQKQQA LVSTAREFVR HQVIGKTGTI FIDGYRNENK ELGFDARFLV SFKYNNNIDL SETLVQNGWA TVIRHNKATS HERSLNWDRL IEIEEEQKKQ AKKGLFTSGD ITKVLTVGTR VIDASENFAK AKTFFNGFKQ KGRISGYYVE FVPSINRVKL FNPKEGLKLT LILGGLTNER SEALGEQGVK FLNKKFLQRA VEFDIYDTDK IGSFIGNLYA SNNSLSPVQV NLLEQGLTKT HEIAINANSF AGELIKAEES AQSSKKGVWA GYDPAKAKAE LDQTAAKLNE LNLESLKPKF FDVEIVDVDN TGVVSFHHLD GATVAKFGDF KKKFNDFHLK LPSASTQSVD LPHNLTKAPK KGELVSAKFA ENSKYYRAKV VNFDKASNKY EVKHLDFGNV DKVPLNSLRL LPAQFNLQAF PVFAHTATLQ NLRLPPKTPT DYLTDALYAL EDLTFEKKLV ISALPSSNPS VEYEGIFYDA EESLKDSTYT INKQLVSEGW AIVDTKNVKP PVKDYVNELV TVQNKAKSQH SGCWEFGDVS FDDEDTF
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