| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_72477 |
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| Symbol | NOP58 |
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| ID | 4839579 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009045 |
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| Strand | + |
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| Start bp | 108195 |
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| End bp | 110116 |
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| Gene Length | 1922 bp |
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| Protein Length | 515 aa |
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| Translation table | 12 |
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| GC content | 44% |
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| IMG OID | 640390894 |
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| Product | part of small (ribosomal) subunit (SSU) processosome; U3 snoRNP protein |
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| Protein accession | XP_001384674 |
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| Protein GI | 126136301 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1498] Protein implicated in ribosomal biogenesis, Nop56p homolog |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.158216 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TGTTCATATA TTGTTTGTAG CAACCGTTAT TCGGAACTGA ATCATCTGTT GTAAGAAGGT
TCTATAAGAG GATCTCCCTA GCATCAACTA AGAAGAATCG ATAAAACAGG TATTTTCATT
CCAGTAATTT TCCTACCTTG ATACCATCTA TATTTACCTA CAACAGTACA AAATGGCCTA
CGTATTGACC GAAACTGCTG CCGGATACGC CCTCTTGAAG GCTTCCGATA AGAAGATCCA
CAAGTCATCT TCTTTAATCG AAGATTTGAA CACTGCCGAC AAGGTTGCTG AGCAGTTCAA
GATCCACCGT TTTGAAAAGT TCCAATCAGC TGCTAATGCC TTAGAAGAGG CTAACGCTGT
CATCGAGGGC CGTGTCTCTG ACTCCTTGAA GAAGATGTTG GAAGATGCCA AGTCCGACAA
GAAGGCTACT TTGATCGTTT CTGAAGCCAA ATTGGGTAAT GCCATCAACA AGTTGGGCTT
GAACTTCTCG GTTGTATCAG ATGCTGCCTC GTTGGACTTG CACAGAGCAA TCAGAGAATT
CTTGCCTGAA TTGTTGCCAG GCTTGGATGA CTCCATGTTG AAGCAAATGT CATTGGGTTT
GGCCCATTCC ATTGGCCGTC ACAAGTTGAA ATTCTCTGCC GACAAGGTCG ACACTATGAT
TGTACAAGCC ATTGCTTTGT TGGACGATTT AGACAAGGAA TTGAACACCT ACGCCATGAG
ATGTAAGGAA TGGTATGGCT GGCACTTTCC AGAGTTGGCC AAGATGATTG TCGACTCCGT
AGCTTATGCC AGAATCATCT TGACCATGGG TGTTAGATCC AATGCCTCGG AAACTGATTT
GTCGGAAATT CTTCCAGAGG AATTGGAAGA ACAAGTCAAA TCTGCCGCTG AAGTTTCTAT
GGGTACTGAA ATCACTGCAA TTGATTTGGA AAACATCAGA GCTCTTGCCG AACAGATTGT
TGACTTTGCT GCTTACAGAG AGCAATTGTC CAACTACTTG TCTTCGCGTA TGAAGGCTAT
CGCACCAAAC TTGACTGCCT TGGTTGGTGA GTTAGTCGGA GCCAGATTGA TTGCCCACGC
TGGTTCATTG ACCTCTTTGG CTAAGGCTCC AGCTTCGACC ATCCAAATCT TGGGTGCTGA
AAAGGCTTTG TTCAGAGCCT TGAAGACCAA GCACGACACA CCAAAGTACG GTTTGTTGTA
CCATGCCTCA TTGGTTGGTC AAGCATCCGG TAAGAACAAG GGTAAGATTG CCAGAGTGTT
GGCTGCTAAG GCTGCCGTGG CCTTGAGATA CGACTCTCTT GCTGAAGAAA GAGACGACTC
CGGTGACTTT GGTTTGGAAG TCAGAGCCAA GGTAGAATCT AGATTGAGTG CTCTCGAAGG
CCGTGACTTG AGAACCACCT CGAAGGTTGT CAGAGAACAA CCAAAGGTTG ACATAACGGA
AGCCCGTGCA TACAACGCTG ACGCCGACGC TCCAACTGCT GAAGTTGACT CGGACGACGA
ATCGGACACC GAAGAAATCG ACACCAAGAA GGAAAAGAAG GAAAAGAAAG AAAAGAAAGA
AAAGAAGGAC AAGAAGAGAA AGAGAGAAGA TGACGACGAA GAAGAAGAAG ACAAGAAGTC
CAAGAAGGAG AAGAAGGAGA AGAAGGAAAA GAAGGAGAAG AAGGAAAAGA AGGAAAAGAA
AGATAAGAAA GATAAGAAGT CCAAGAAAGA AAAGAAGTAG ACAGCATCAC CAGTACGCTT
TCTTCTGTAA CTTTTACTTT ACTTTTTGCA TTTACTACAT TCATGACTTT GATTCTCAAG
TTCACCAACC AACCATCTTA GAAGTTTACT TGCCTTGGAG CCCATGACTT CTTATTTTGT
TCTATAGTAC GATGTTGTCA CCCAGCATTT TTGTGTTTCA TTAATATATA TATACATATA
TC
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| Protein sequence | MAYVLTETAA GYALLKASDK KIHKSSSLIE DLNTADKVAE QFKIHRFEKF QSAANALEEA
NAVIEGRVSD SLKKMLEDAK SDKKATLIVS EAKLGNAINK LGLNFSVVSD AASLDLHRAI
REFLPELLPG LDDSMLKQMS LGLAHSIGRH KLKFSADKVD TMIVQAIALL DDLDKELNTY
AMRCKEWYGW HFPELAKMIV DSVAYARIIL TMGVRSNASE TDLSEILPEE LEEQVKSAAE
VSMGTEITAI DLENIRALAE QIVDFAAYRE QLSNYLSSRM KAIAPNLTAL VGELVGARLI
AHAGSLTSLA KAPASTIQIL GAEKALFRAL KTKHDTPKYG LLYHASLVGQ ASGKNKGKIA
RVLAAKAAVA LRYDSLAEER DDSGDFGLEV RAKVESRLSA LEGRDLRTTS KVVREQPKVD
ITEARAYNAD ADAPTAEVDS DDESDTEEID TKKEKKEKKE KKEKKDKKRK REDDDEEEED
KKSKKEKKEK KEKKEKKEKK EKKDKKDKKS KKEKK
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