| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_69854 |
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| Symbol | PSE1 |
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| ID | 4837348 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | - |
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| Start bp | 1714265 |
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| End bp | 1717711 |
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| Gene Length | 3447 bp |
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| Protein Length | 1090 aa |
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| Translation table | 12 |
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| GC content | 42% |
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| IMG OID | 640388663 |
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| Product | Karyopherin Functions in nuclear transport of proteins |
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| Protein accession | XP_001383094 |
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| Protein GI | 150864326 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5215] Karyopherin (importin) beta |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | AGGAAGCTGA AGGCACCAAG AAGACCGTCA TTCAGCTTTA AAGATTTGAC TATCTGCGGC
AGATTCTTGT GAAAGGTAAA ATTGATTCAA ATGTCCGTTT TGCCCGACCA AATCCGTGGT
GTGTTGGCCC AGTTGTTGCA CAGCTTGTCT TCGTCAGACA ATAGCGTCAG ATCTGGTGCT
GAAAAATCCC TTGAAAGCGA ATGGACTAAT ACTAGCAATG TTGAGATGCT TCTCACTTAC
TTAGCCGAGG AAGCCTGTAG TGGAGCCGAT GAAAGTACCC GATCCTTTGC TGCTGTTTTG
TTTAGACGTG TTGCAATAAA GTCTCCTAAG GAGTTGGCCA GTGTAACTGA TAGAACTATA
GGGGTGATCA GCGAACCTGT AAGACAACAA ATTCGCTCGA TATTATTGCG AGGATTCGCC
TCTCAACAGA CAAACCAAGT GAGACACAAG CTTTCTGATG CAATCTCAGA AGTTGCAAAG
GAAGACGCTT CCCCACAAGG TAGTTGGAAC GAGCTTATTC CAGCATTGTT TGAAGCTACC
AGAAATACCG ATCCAAGTTT TCGCGAGTCT GCTTTCCGTG TTTTCTCCTC AGCCCCCGAG
TTGATTGATA AGTCTTATCT CGATCTGGTG TTACCAATTT TCAACTCCGG TTTCGAGGAT
AGTGACGATG ATGTTCGTAT TGCTGCCTGT TCTGCTTTTG TGGCATTTTT CAGAGAGTTG
CCTAAGAAGA GCTGGCAGTC ATTATCTCCT TTATTACCTA ATCTTTTGAA CTCCTTGCCA
AGATTTTTAC TGAATGGCCA AGATCAAGCT TTGGCTTCTG TATTGGAATC TCTCATCGAT
TTGGTAGAGC TTGCCCCAAA GATGTTTAAA GATATGTTCC CCACCATCAT CGAGTTTTGC
GCAGCAGTCT CTAAGAATAA GGAATTGGAA GCTAACACTC GTATGGCCTC TCTTGAATTG
TTAACTACGT TTGCTGAAGT GTCTCCACAA ATGTGTAAGC GTACTCAGTC ATATACTGAC
AACATGGTAC TTATCACATT GTCAATGTTA ACCGAAGTAT GTATGGACGA TGATGAAGCA
GCAGAATGGA ACAACAACGA TGACTCAGAA GACGACGAAG ATGAAGAACA TGATGCTGCT
CGTCAAGCAT TAGACAGAGT AGCATTAAGA TTGAACGGTC AGGCTCTAGC TGGTCCCTTG
TTCCAGTATT TACCTGCCAT GATCCACTCT ACATCTTGGA GAGAGCGCCA AGCTGCTTTA
ATGGCATTGT CGTCTACTGC TGAAGGATGT GTTGATGTAT TGATTGATGA GATCCCTAGA
ATTTTAGATC TTATTTTGCC AACTTTGGAT GACAGCCATC CTAGAGTCCA GTATGCGTGC
TGTAACGCAT TGGGACAGAT GTCTACCGAT TTTGCAGATG TCATCCAAAG AACTGCAGGT
GCAAGGATAT TGCCAGCCTT GATTTCCAAA CTTACAAACA AATCTGTTCC AAGGGTTCAA
GCCCACGCGG CTGCTGCTTT GGTTAATTTC TCCGAGGCCG CATCCAAAGA CACATTAGAA
CCTTACTTGG ACGATTTATT GAACAACTTG TTGGTATTGC TACAATCTCC GAAAAGGTAC
GTCCAGGAAC AGGTGTTAAC AACCATTGCT ATTATTGCAG ATGCTGCAGA AAACAAATTT
ATAAAGTACT ATGATACATT GATGCCAATT TTGACATCCG TCTTAAAAAC GGATATAGGG
GATGAAAACA GTCTAATAAA GGCTAAATGC ATTGAATGCT CCACTTTGAT TGCTTTGGCT
GTTGGTAAGG AGAAATTTGC TCCTCATTGT CAGGACTTGA TTCAATTATT TGGTCACGTA
CAAGAAACAA TTACGCAAGA CGACGATCCA ATCAAGCAGT ATTTAGAACA AGGCTGGGGC
AGAATTTGCC GAATTATTGG AAAGGACTTC CTTCCGTACC TTCCTGCCGT ATTGCCCCCT
CTTTTCGAAG CAGCAAAGGC AACTCAAGAC ATATCTTTGT TGGAAGAGGA GCAAGCCGAA
GAGTTCAATT CAAATGAAGA GTGGGACGTT ATTAATTTAT CAGGAAAGCT CATTGCAGTT
CATACTGCAG CTTTGGATGA TAAGGTGTCT GCGATGGATC TTCTTAGAAC CTATGCTGTA
CAATTGAAAG GAGATTTCTT CCCTTGGGTA AAAGAAATTG TTCAAGATAT TGGGATCCCG
GCGCTAGATT TTTACTTGCA TGATGGAGTG AGAGGTTCAG CTGCCCTAAC CTTAGCTTCT
TTGTTAAGGT GCTCTGTTTA TGCTACAGGT AATTCATCAA ATGACACATT GGAACTCTGG
TCTCAGATTT CAAACAAGCT TGTGGAGGTT TTGACCAGTG AACCAGTTCC CCAATTATTG
GTTGCCTACT ACACCGCTTT GGTCGAATCC ATAAACGTAC TTGGTCCAAA TTCCTTATCT
GCAACGCAGT TGAAGTCTTT GGCTACTTCT ATAAATGCAA ACTTGGTTGA GATTTACGAG
AGAATAAAGG CCAGAGACAA TGAAGATGAC GAGTACACTG AAGACATCGA GGAAGACGAA
GACGAGTACA CTGATGAAGA GTTGCTTGAT GAGATCAACA AAGCTATTTC TGCTATCTTC
AAGAATTCCA AGGCTAACTT CTTGCCAGCA TTTCAAGAGC TTGTTCATAC CATTGGTTCT
TTCGTCGTAG ATGACAACAC TAACATTAAA CTTTGCGGAT TGTGTGTTGT ATGTGATGTT
TTGGAACACT GCGGAGCAGA TTCAGTCTTA TTTAAAGATA TCTTTCTCAA TGTAATCGGT
GAGTCCATCA CATCAGCTCA CGCAGGAATC CGACAAGCTG CTTCATATGC AGTGGGTGTT
GCAGCTCAAT ACGGTGGTGA ACCTTTTGCT GACTTCTGTT TGGCCTGCTT GGAGCCAATG
TTCAAGATGG CTTCCGTGCC TGATGCGCGC GCTGATGAGA ACATTCATGC CACAGAAAAT
TCAGTTGCAG CAATTGCGAA AGTTTGCCAT AGATTTTCAA GCTCTATTCC AAATATTGAT
GCTGTTATAG ATCAATGGAT AAACTTGTTG CCAGTCGTTC AAGACGATCA GGCTGCACCA
TTTGCTTACA CGTTCTTGAG TGAGCTTATT CAGAACCAAC ATCCATCGAT TCAAAATCAA
ACACCTAAGG TTGTAGATTC CGTAATTCAG GCATTAGCAC ATGGTTCGAT TGCTGGTAAT
AATGCAGAAA GACTCATTGC ATCTACAAGA CAATTATTGA GCTCTATTCC ACAAAGTGAG
GCTATGGCTT TGTTACAAAA GAATAGTTCT GATATAGACG TGGTACAAAA GTACTTCTCC
TAGTAGAAGT GCAAGCGTCA GATACTTAGA CTGTCATAAT TGGATAAATA TTCAATATAT
AGCTGTAATA ATATTTTTTA CATTCAA
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| Protein sequence | MSVLPDQIRG VLAQLLHSLS SSDNSVRSGA EKSLESEWTN TSNVEMLLTY LAEEACSGAD
ESTRSFAAVL FRRVAIKSPK ELASVTDRTI GVISEPVRQQ IRSILLRGFA SQQTNQVRHK
LSDAISEVAK EDASPQGSWN ELIPALFEAT RNTDPSFRES AFRVFSSAPE LIDKSYLDSV
LPIFNSGFED SDDDVRIAAC SAFVAFFREL PKKSWQSLSP LLPNLLNSLP RFLSNGQDQA
LASVLESLID LVELAPKMFK DMFPTIIEFC AAVSKNKELE ANTRMASLEL LTTFAEVSPQ
MCKRTQSYTD NMVLITLSML TEVCMDDDEA AEWNNNDDSE DDEDEEHDAA RQALDRVALR
LNGQALAGPL FQYLPAMIHS TSWRERQAAL MALSSTAEGC VDVLIDEIPR ILDLILPTLD
DSHPRVQYAC CNALGQMSTD FADVIQRTAG ARILPALISK LTNKSVPRVQ AHAAAALVNF
SEAASKDTLE PYLDDLLNNL LVLLQSPKRY VQEQVLTTIA IIADAAENKF IKYYDTLMPI
LTSVLKTDIG DENSLIKAKC IECSTLIALA VGKEKFAPHC QDLIQLFGHV QETITQDDDP
IKQYLEQGWG RICRIIGKDF LPYLPAVLPP LFEAAKATQD ISLLEEEQAE EFNSNEEWDV
INLSGKLIAV HTAALDDKVS AMDLLRTYAV QLKGDFFPWV KEIVQDIGIP ALDFYLHDGV
RGSAALTLAS LLRCSVYATG NSSNDTLELW SQISNKLVEV LTSEPVPQLL VAYYTALVES
INVLGPNSLS ATQLKSLATS INANLVEIYE RIKARDNEDD EYTEDIEEDE DEYTDEELLD
EINKAISAIF KNSKANFLPA FQELVHTIGS FVVDDNTNIK LCGLCVVCDV LEHCGADSVL
FKDIFLNVIG ESITSAHAGI RQAASYAVGV AAQYGGEPFA DFCLACLEPM FKMASVPDAR
ADENIHATEN SVAAIAKVCH RFSSSIPNID AVIDQWINLL PVVQDDQAAP FAYTFLSELI
QNQHPSIQNQ TPKVVDSVIQ ALAHGSIAGN NAERLIASTR QLLSSIPQSE AMALLQKNSS
DIDVVQKYFS
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