| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_69303 |
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| Symbol | LSC1 |
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| ID | 4851002 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 684256 |
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| End bp | 685486 |
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| Gene Length | 1231 bp |
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| Protein Length | 324 aa |
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| Translation table | |
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| GC content | 48% |
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| IMG OID | 640392710 |
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| Product | succinate-CoA ligase |
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| Protein accession | XP_001387359 |
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| Protein GI | 126273963 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0074] Succinyl-CoA synthetase, alpha subunit |
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| TIGRFAM ID | [TIGR01019] succinyl-CoA synthetase, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.383997 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GATCTACCAG TCAGCTTCTG TCCTTTAACG GTTCACTGCC ATCCAATTTA GTCTACTTTT
ATCTATTAGT TTGGAAGTAA CCAAAAAAGT ATCTCACTAC TGTTTGTCTC TACTTTCTCA
CGTACTCTAC CACTGATTCC ACCAGAACTC ACCATGTTGA ACAGACAATT CATCCGCGGC
TTCGCCAACT CTGCCCGTGC CAGCAACTAT GCCAACACCA TCCAGAACTT GAAGGTCAAC
GCCGACACCA AGGTCATCTA CCAAGGTTTC ACTGGTAAGC AGGCTACCTT CCATGCCGAG
CAAGCCATTG CTTACGGCAC CCAAGTCGTA GGAGGCACCA ACCCTAAGAA GGCTGGCCAG
ACCCATTTGG ACAGACCTGT CTTTGCTTCT GTCAAGGACG CCATTGCCCA AACTGGAGCC
ACTGCTACTG GTATCTTCGT GCCTCCTCCA ATCGCTGCTG CTGCCATCGA AGAAGCCATC
GCTGCTGAGA TCCCATTGGC CGTAGCTATT ACCGAGGGTA TCCCCCAGAA GGACATGGTC
AGAGTCGCCC AGATCTTGAA GACTCAAGAA AAGACTAGAT TGGTTGGTCC AAACTGTCCT
GGTATAATCT CTCCAGACCA ATGTAAGATC GGTATTATGC CTTCGCACAT CCACCAAAGA
GGTAGAGTCG GTATCATTTC CAGATCAGGA ACCTTGACCT ACGAAGCTGT GGCCCAAACC
ACTGCTGTTG GTCTTGGTCA ATCCCTCGTT ATCGGTATGG GTGGTGATCC TTTCCCAGGT
ACTAACTTCA TCGACGCCTT GACCCTCTTC TTGAGAGATG AAGAAACCGA AGGTATCATT
TTGATTGGTG AAATTGGTGG TACTGCTGAA GAAGAGGCTG CCGAATTCTT AAAGCAACAC
AACTTGACCA GACCTCAAGG TCCTAAGCCT GTTGTTTCCT TCATCGCCGG TGTCTCTGCT
CCTCCAGGTA GAAGAATGGG TCACGCTGGT GCCATTGTCT CCGGTGGTAA GGGTGACGCT
AAGTCCAAGA TCGCTTCTTT GCAATCTGCC GGTGTCGTAG TGGAAGCCTC TCCTGCCAGA
TTGGGTAACT CGTTGTTGAA CGAATTCAAG GCCAAGGGCT TGTTGTAGAC TGCTTAGTGA
TTATTGAAAA AATTGCTAGA GTTCTGTATT CGCAAAATAA CTTATTCCTC TTTTTGTTGT
CCTAGATAGA ATGAATACAC ACACCAGACT G
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| Protein sequence | MLNRQFIRGF ANSARASNYA NTIQNLKVNA DTKVIYQGFT GKQATFHAEQ AIAYGTQVVG
GTNPKKAGQT HLDRPVFASV KDAIAQTGAT ATGIFVPPPI AAAAIEEAIA AEIPLAVAIT
EGIPQKDMVR VAQILKTQEK TRLVGPNCPG IISPDQCKIG IMPSHIHQRG RVGIISRSGT
LTYEAVAQTT AVGLGQSLVI GMGGDPFPGT NFIDALTLFL RDEETEGIIL IGEIGGTAEE
EAAEFLKQHN LTRPQGPKPV VSFIAGVSAP PGRRMGHAGA IVSGGKGDAK SKIASLQSAG
VVVEASPARL GNSLLNEFKA KGLL
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