Gene PICST_66961 details

Gene Information

• Locus tag: PICST_66961
• Symbol: LSC2
• ID: 4837616
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Scheffersomyces stipitis CBS 6054
• Kingdom: Eukaryota
• Replicon accession: NC_009042
• Strand: +
• Start bp: 1388963
• End bp: 1391032
• Gene Length: 2070 bp
• Protein Length: 414 aa
• Translation table: 12
• GC content: 47%
• IMG OID: 640388931
• Product: succinate--CoA ligase (GDP-forming) beta chain (LSC2)
• Protein accession: XP_001382488
• Protein GI: 126131926
• COG category: [C] Energy production and conversion
• COG ID: [COG0045] Succinyl-CoA synthetase, beta subunit
• TIGRFAM ID: [TIGR01016] succinyl-CoA synthetase, beta subunit

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 17
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

CACTACTGTC TAATCATATA CGCCCCAATG TTGTCTAGAA CCATTGCCCG TGCCTCCAGA 
GTATGTATCG TGTTCCCTTG CGAGACCTCG GCTCGTATAC ATCCGAGACC CAGCGATGAG 
GTCGGCTGGT GTCCCGAAAC ACGGTCCAGC GATTCGATTT CAAGAAGCTG ATGAATCCAA 
GAGGTCAGAT AAAGAGAAGT GTAGGAAGAT CCACCGCAGC AGCTGATGTA GTGTTGATCA 
GGGACCACCC TTTGATCGCT GTTGCTAGAA ACGGTGTCTA CTGACGTGAA ATCGCGGTAT 
CTGTGAGAAT CGAGAATCGA GAATCAACCT GTTACAGACA TCCACCATGA GAACTTTGGA 
AACCCAATGA AATCAACGAA AACAAATTGT AACAACTATC ATGTGATCTT TTATGACCCC 
ATATTGACAT TGTCGACCAT CACATTGGTT GACGTCGTAG TTTGCCGAGT CGACACATAT 
ATTCACCGTC TGTCGATTTC AAATCTCGCG ATTGTCAATT CTCATTTCCC AGACTTGAGT 
TCGCATTCCT TAGTGCTGAT TTTTCACCCC ATTGTGCATT CCGTCAGCTC ACATTCACAG 
TGATAGCAGC CACTATTTAG ACGATATTAG ATTGCACTCA CAACATTGAC TCACTAAAAT 
TACATCTCGT ATCTCATTTG TCAAGAACCC ATTTCTCGTC TCAGAGCTCA ATTCTGAGGT 
TATCTGATTT CGCATTTTTC ATACGCATTT AATACTAACA ATTCAGGCTG TTGCTCAACA 
GAAAAGATTC TTGTCTTTGC ACGAATACCG TTCCGCTGCC TTGCTTGAGC AATACGGCGT 
CGGTGTTCCT AAAGGTTACG CCGCTACCAC GGCTGAAGGC GCCTTTGACG CTGCTAAGAA 
GCTCGGAACC ACTGAGTTGG TCATCAAGGC CCAAGCCTTG ACCGGTGGCC GTGGTAAGGG 
TCACTTCGAC TCTGGTTTAC AAGGAGGTGT CAAATTGATT TCGTCTCCAG AAGAAGCCAA 
GGACTTGGCT GCTCAGATGT TGGGCCACAA GTTGATCACA AAGCAGACCG GAGCTGCCGG 
AAAAGAAGTC ACTGCCGTAT ACATTGTAGA AAGAAGAGAT GCCTTGACTG AAGCTTACGT 
AGCCATCTTG AACGACAGAG CCGCCCAGAC TCCAATCATT GTCGCTTCTT CCCAGGGTGG 
TATGGACATC GAAGGTGTTG CTGCCGAGAC CCCAGAAGCC ATCCACACTT TCAAGGTTGA 
CTTGAAGGAA GGTGTCACTG ACAAATTAGC TACAGAAGTA GCTTCCGTAT TGGGCTACAC 
CGACGCTGCC ATCCCAGAAG CAGCCAAGGC TGTCCAGAAC TTGTACAAGG TGTTTGAAGA 
AAAGGACTGC ACCCAAGTTG AAATCAACCC TTTGTCTGAA ACTCCAGACC ACAAGGTATT 
GGCCATGGAC GCCAAGTTGG GCTTTGATGA CAATGCTTCG TTCCGTCAAG AAGAAGTATT 
CAACTGGAGA GACCCAACCC AGGAAGACCC TGAAGAAGTC GAAGCTTCCA AGTACGGCTT 
GAACTTCATC AAGTTGGACG GTAACATCGC CAACATCGTC AACGGTGCCG GTTTGGCCAT 
GGCCACTATG GACATCATCA AGTTGTACGG AGGTAAGCCT GCCAACTTCT TGGACTGTGG 
TGGTACTGCC ACCCCTGCCA CTATCGAGAA GGCTTTCGAA TTGATCTTGT CTGACAAGAA 
GGTCAACGGT ATCTTTGTCA ACATCTTCGG TGGTATCGTC AGATGTGACT ACGTTGCCGA 
AGGTTTGATT GCTGCCACCA AGAACTTCAA CTTGGACATT CCAGTTGTCG TCAGATTACA 
GGGTACCAAC ATGCAACAGG CCAAGGAGTT GATTGATAAC TCGGGCTTGA AGTTGTTTGC 
CTTTGAAGAC TTGGACCCTG CCGCCGAAAA GATCGTCGAA TTGGCTCCAG CCAACTAGAT 
AGATTTATAT AGCTAATCCA TAGAGTGAGA GAAAAGAGTA GAAGATATGG TAATGAAGTA 
GTACGCAAGT AATTCAGCAT CAAGTTGTAC 

 

Protein sequence

MLSRTIARAS RAVAQQKRFL SLHEYRSAAL LEQYGVGVPK GYAATTAEGA FDAAKKLGTT 
ELVIKAQALT GGRGKGHFDS GLQGGVKLIS SPEEAKDLAA QMLGHKLITK QTGAAGKEVT 
AVYIVERRDA LTEAYVAILN DRAAQTPIIV ASSQGGMDIE GVAAETPEAI HTFKVDLKEG 
VTDKLATEVA SVLGYTDAAI PEAAKAVQNL YKVFEEKDCT QVEINPLSET PDHKVLAMDA 
KLGFDDNASF RQEEVFNWRD PTQEDPEEVE ASKYGLNFIK LDGNIANIVN GAGLAMATMD 
IIKLYGGKPA NFLDCGGTAT PATIEKAFEL ILSDKKVNGI FVNIFGGIVR CDYVAEGLIA 
ATKNFNLDIP VVVRLQGTNM QQAKELIDNS GLKLFAFEDL DPAAEKIVEL APAN