| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_66237 |
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| Symbol | RPO31 |
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| ID | 4850832 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | - |
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| Start bp | 182390 |
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| End bp | 186787 |
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| Gene Length | 4398 bp |
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| Protein Length | 1448 aa |
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| Translation table | |
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| GC content | 44% |
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| IMG OID | 640392540 |
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| Product | DNA-directed RNA polymerase III subunit C1 (RPO31) |
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| Protein accession | XP_001387687 |
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| Protein GI | 126273619 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | CTGATTTCTC AGCCATGAAG GAAGTGGTAG TCGACATCGC GCCCAAGTGT ATCAAGGGGC
TCGAGTTCTC CGCTCTTTCG GCCAAAGACA TTGTGGCCCA GAGTGAGGTA GAGGTGCAAA
CACGAGATCT CTATGATTTA GAAAAGGGAA GAACTCCTAA AGTAGCTGGG GCACTCGATA
CGAGAATGGG GATATCGCTG AATCTGAACG AATGTGCAAC TTGTCATGGA AATTTGGCTT
CGTGCCATGG GCATTTCGGC CATATACGAT TGGCGTTGCC GGTTTTTCAT GTAGGCTACT
TCAAGCTGAT TATCCAAGTT TTGCAATGTA TCTGTAAGAA TTGTTCAGCT GTGTTGTTAG
ACGAAAACAC CAAGAGACAG TTTATTTCCG ATTTGCGCCG TCCCAACATC GACAACTTGC
GTAGAATGAA GATTTTGAAG AAGGTCTTGG ACCAGTGTAA GAAACAAAGA AGGTGTCTCA
AATGTAACCA TGTCAATGGT GTAGTCAAGA AGGCTGCCAG TGGTGCTGGG CCTGCTGCCT
TGAAAATCGT ACACGACACT TTCCGTTGGA TCGGAAAGAA GCCAACACCC GAAAAAGAAT
ACTGGGATAA GGAATTCGAC CAGGTGTTGC TGAGAAACCC CGAACTTGAG AAGTTCGCTA
AAAGAGTCTA TGATGACTTG AATCCTCTAA AAACGCTTAA TTTATTCAAG CAGATAACCC
CCTCAGACTG TGAATTGTTT GGCTTGGATC CAGCCAGAGG AGGAAGACCA GAAATGTACA
TTTGGCGTTA CTTACCAGCT CCCCCAGTGT GTATCAGACC TTCAGTCATG ATGGATAGCC
AGTCCAACGA AGATGATCTC ACAGTCAAGT TAACAGAAAT CGTGTGGACT TCGTCTTTGA
TCAAGGCCGG GATCGAAAAG GGTATTTCTA TCAATAACTT GATGGAGCAA TGGGACTACT
TGCAGTTGTC TGTAGCCATG TATATCAACT CTGACTCTGC CAACCCTGCA CTTTTACCTT
CTTCAGGTGG TGGAGGCTCC AAGTCTTCCA AGCCTATCCG TGGTTTCTGC CAGAGACTAA
AGGGGAAGCA GGGACGTTTC AGAGGAAATT TATCCGGAAA AAGAGTCGAT TTCTCCGGTA
GAACAGTCAT TTCTCCAGAT CCTAATCTTA AGATTGATGA AGTTGCCGTA CCGGAATTAG
TTGCAAAAGT GTTGACATAC CCCGAGAGAT GTACCAGATA TAACAGGAAG AAGCTTCAGA
GATTAGTAGT CAACGGTCCC GATATCCATC CTGGTGCCAA CTATGTCATG AAGCAGAACG
AGCAGGCAAA GAGAAACTTG CGATTTGGTG ACAGAGTGAA ATTGGCCAAA AACTTACAAA
TAGGCGATCT AGTAGAAAGA CATATCGAGG ACGGAGATGT GGTATTGTTC AACAGACAGC
CTTCTTTACA TAGACTTTCC ATCTTGTCGC ACTATGCCAA AATCAGACCC TGGAGAACAT
TCAGATTGAA CGAATGTGTT TGTACTCCGT ATAATGCGGA TTTCGATGGT GACGAAATGA
ACTTACACGT GCCACAAACA GAGGAAGCTC GTGCTGAAGC CATCAACTTA ATGGGGGTCA
AAAATAATCT TTTGACTCCC AAGTCCGGTG AACCGATCAT TGCTGCTACC CAGGATTTTA
TCACTGGTTC ATACTTGATT TCGCACAAGG ATTCGTTCTT TGATCGAGCC TCGTTGGTTC
AGCTCTTGAG TATGATGTCG GATGCTGATG TACAGTTTGA CATTCCGCCT CCATCAATCT
TCAAGCCAGT AATGCTCTGG ACCGGTAAGC AGGTATTCTC GTTGTTGATC AAACCAAACA
AAAAGTCTAA TGTTGTCATC AACTTGGACG CTAAATGCAA AACTTTCATT CCTCCGGAAA
AAGGATTGCC AAGCGAAATG TCACCAAATG ATGGTTTTGT CATTATCAGA GGTTCCCAGG
TTTTGGCTGG TGTCATGGAC AAGTCGTTAT TGGGAGATGG TAAGAAGCAT TCCGTTTTCT
ATACTATCTT GAGAGACTAT GGCCCTGAAG AAGCAGCTAC CGCCATGAAC AGAATGGCCA
AGTTGTGTGC CAGATTCTTG GGTAACCGTG GTTTTTCGAT TGGTATCAAC GATGTCACTC
CTGGCTTTGA CTTGCGAAGA AAGAAAGAAT TAATGGTAGA ACAGGCTTAC TTGAAGTGTG
ACGAATTGAT TGACTTGTAT CACAGAGGTA AGTTAGAAAC TCAACCTGGT TGTAATGAGG
AACAGACTTT GGAAGCTAAG ATTTCCGGTT TGCTTTCGAA GGTTAGAGAA GAAGTAGGTG
AAGTGTGTAT TAGAGAGCTT GACTCGTTGA ATGCTCCACT CATTATGGCC ACTTGCGGTT
CCAAGGGTTC CACTTTGAAC GTGTCACAGA TGGTTGCAGT TGTCGGGCAA CAGATTATTT
CTGGTAATCG TGTTCCTGAT GGGTTCCAAG ATAGATCTTT GCCTCACTTC ACGAAGAACT
CCAAGACTCC TCAGTCTAAG GGGTTTGTGA GAAATTCATT CTACAGTGGC TTGACACCAC
CGGAGTTCCT TTTTCACGCC ATTTCTGGTA GAGAAGGGTT AGTTGATACT GCTGTCAAGA
CTGCTGAAAC TGGGTACATG TCAAGAAGAT TGATGAAGTC ATTGGAAGAT TTGTCTTCGC
AGTACGATTC TACAGTTAGA AACTCCTCAA ATGGTATTGT ACAATTCACA TACGGTGGAG
ACGGTTTGGA TCCATACGAC ATGGAAGGGG ATGCCAGACC GGTCAACTTC AAACGTCAAT
GGGACCACGC CTTCAACATT ACCTTCAACA TCAAAGATAA GAGCCTCCTT CCTTACGAAA
TCATCGATTT GGTGAATTCC ATCCTTGAAC CTTTGGAAGA CAGATTAATC AGATATGACA
ACGTAGGCAA AATATTGCCA GAAGAAGATT TCGACAAGAT AGAGTACATT GACCAGAACG
ATGCTGAAAG AGCTTACTAC CAGTCGCTTC GCGATTTCGT TACTGACAAG GCCGAACAAC
TTGCCCAGAT TAGAGAGCAT AGAGGATTGC GTACATTCTT CACAAGACCA GACAGTGAAG
ATATACTCTT TGATTCTGAC GAATCTGCAG TTAATGCTGT AGATCAACTT CTCAAAATTT
CTTCCAAAAC CATTGAGAAG TTCTTGGAGC AATCTCTCTA CAAATATTCC AAGGCCAAGG
TTGAGCCAGG TACTGCTGTT GGTGCTATAG GTGCACAGTC TATTGGAGAA CCTGGTACTC
AGATGACGTT GAAGACTTTC CATTTCGCTG GTGTTGCCTC TATGAATGTC ACTTTGGGTG
TTCCCCGTAT TAAGGAAATT ATCAATGCCT CCAAGACGAT TTCCACACCT ATCATCAACT
CCGTTTTGGT CAACGATGAC GACGAGATCG CAGCCCGTGT GGTAAAGGGT AGAGTCGAGA
AAACGTTGTT GAAGGATGTT GCGTTCTTCA TCGAAGATGT ATACAAGAAC GAAATGGCCT
ACTTGTCTAT CAAGATCGAC ATGAGCACTA TTGAAAAGTT GCAGCTCGAG TTGACGATCG
ACGACATCGT CACAGCCATA CACAATGCCC CTAAGTTGAA AATCTCACCT GGAGATGTCT
CAGTTTCTGG AAAAGACAGA GTCAACGTGT TGGCAACGTT GAGAGAAAGC AAGGCAGATG
CCTTGAAGAA TGGTTCCAAC GCAAACGAGT TGTTCTTCAG AATGCAACAA CTCAGAAGAT
CGTTACCCAA CATCTGCATC AAAGGGTTGC CCAACATCAT GCGTGCTGTT ATCAACATTC
GTGATGACGG CAAGAAGGAA TTGTTGGTTG AAGGCTATGG CTTGAAGGAT GTTATGAGTA
CCGACGGTAT TGTAGGCACC AAGACTACCA CCAACCATGT TCTTGAGGTG TTTGAAGTGT
TGGGAATTGA AGCTGCTAGA GCATCCATCA TCAAGGAAAT TGACTACACC ATGAGTAATC
ACGGGATGAG TGTCGATCCT CGTCACATCC AGCTTTTGGG TGATGTGATG ACTTACAAGG
GCGAAGTATT GGGTATCACC AGATTCGGCT TGAGTAAGAT GAGAGATTCG GTGTTACAAT
TGGCATCTTT CGAAAAGACC ACCGACCACT TGTTTGATGC AGCCTTCTTC ATGAAGAGCG
ACAAGATCGA AGGTGTTTCT GAATGTATTA TATTGGGGCA AAGCATGAGC ATAGGGACTG
GTTCGTTCAA ATTGGTCAAG TCGTCCAACT ACGACAAAAA GGTTTTGAAA ATGAAGCCCA
CCCTATTCGA GGGATTGTGT GAAGTGGCTT CCACTGCATA AATAGATTTA GTAGCAATAC
ATGTATATTA ATGGCTGC
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| Protein sequence | MKEVVVDIAP KCIKGLEFSA LSAKDIVAQS EVEVQTRDLY DLEKGRTPKV AGALDTRMGI
SLNLNECATC HGNLASCHGH FGHIRLALPV FHVGYFKLII QVLQCICKNC SAVLLDENTK
RQFISDLRRP NIDNLRRMKI LKKVLDQCKK QRRCLKCNHV NGVVKKAASG AGPAALKIVH
DTFRWIGKKP TPEKEYWDKE FDQVLLRNPE LEKFAKRVYD DLNPLKTLNL FKQITPSDCE
LFGLDPARGG RPEMYIWRYL PAPPVCIRPS VMMDSQSNED DLTVKLTEIV WTSSLIKAGI
EKGISINNLM EQWDYLQLSV AMYINSDSAN PALLPSSGGG GSKSSKPIRG FCQRLKGKQG
RFRGNLSGKR VDFSGRTVIS PDPNLKIDEV AVPELVAKVL TYPERCTRYN RKKLQRLVVN
GPDIHPGANY VMKQNEQAKR NLRFGDRVKL AKNLQIGDLV ERHIEDGDVV LFNRQPSLHR
LSILSHYAKI RPWRTFRLNE CVCTPYNADF DGDEMNLHVP QTEEARAEAI NLMGVKNNLL
TPKSGEPIIA ATQDFITGSY LISHKDSFFD RASLVQLLSM MSDADVQFDI PPPSIFKPVM
LWTGKQVFSL LIKPNKKSNV VINLDAKCKT FIPPEKGLPS EMSPNDGFVI IRGSQVLAGV
MDKSLLGDGK KHSVFYTILR DYGPEEAATA MNRMAKLCAR FLGNRGFSIG INDVTPGFDL
RRKKELMVEQ AYLKCDELID LYHRGKLETQ PGCNEEQTLE AKISGLLSKV REEVGEVCIR
ELDSLNAPLI MATCGSKGST LNVSQMVAVV GQQIISGNRV PDGFQDRSLP HFTKNSKTPQ
SKGFVRNSFY SGLTPPEFLF HAISGREGLV DTAVKTAETG YMSRRLMKSL EDLSSQYDST
VRNSSNGIVQ FTYGGDGLDP YDMEGDARPV NFKRQWDHAF NITFNIKDKS LLPYEIIDLV
NSILEPLEDR LIRYDNVGKI LPEEDFDKIE YIDQNDAERA YYQSLRDFVT DKAEQLAQIR
EHRGLRTFFT RPDSEDILFD SDESAVNAVD QLLKISSKTI EKFLEQSLYK YSKAKVEPGT
AVGAIGAQSI GEPGTQMTLK TFHFAGVASM NVTLGVPRIK EIINASKTIS TPIINSVLVN
DDDEIAARVV KGRVEKTLLK DVAFFIEDVY KNEMAYLSIK IDMSTIEKLQ LELTIDDIVT
AIHNAPKLKI SPGDVSVSGK DRVNVLATLR ESKADALKNG SNANELFFRM QQLRRSLPNI
CIKGLPNIMR AVINIRDDGK KELLVEGYGL KDVMSTDGIV GTKTTTNHVL EVFEVLGIEA
ARASIIKEID YTMSNHGMSV DPRHIQLLGD VMTYKGEVLG ITRFGLSKMR DSVLQLASFE
KTTDHLFDAA FFMKSDKIEG VSECIILGQS MSIGTGSFKL VKSSNYDKKV LKMKPTLFEG
LCEVASTA
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