| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_65479 |
|---|
| Symbol | PRP20 |
|---|
| ID | 4837916 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009043 |
|---|
| Strand | + |
|---|
| Start bp | 1466392 |
|---|
| End bp | 1468011 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640389231 |
|---|
| Product | pheromone response pathway |
|---|
| Protein accession | XP_001383565 |
|---|
| Protein GI | 126134081 |
|---|
| COG category | [D] Cell cycle control, cell division, chromosome partitioning
[Z] Cytoskeleton |
|---|
| COG ID | [COG5184] Alpha-tubulin suppressor and related RCC1 domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.349403 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGCTT TGGAGAGAAA GAGAAAGAGC AGTAGTTCTA CTACTTCCAA TGGTACGAAG
AAGTTGAAAT CCCACGTATC TTCTTCATTT ATTCTCCACT CTTATTCGAA GTTGCCTGAT
GTGAATGCCT TTCCAAAGGG CAGATCTGAG CCTTTAGATA TTTTTGTCTG GGGTACTGGT
TCAATGTGTG AATTAGGATT AGGCCCATCG GCTAAGAATA AGGAGGTTAA GAGACCTAGG
TTAAACCCTT TCTTAACAGA GGAGAAATTG GATGGAACAA AGATTGTTGA TTTTTCCGTA
GGTGGAATGC ACACTCTTGC TTTGGATGGA AAGAATCGCA TTTGGTCATG GGGTGGTAAT
GACAGTGGCG TTTTAGGTAG AGATACTTCC AAGGTTAAGG AGGTCTTGAA AGATGTGGAT
TCCAATGAAT CAGAAGATGA TGAAGATGGA GACTTGAATG AGGCGGAATC AACACCGGGC
TTAGTCGAAG GCTTACCTCA AATCAAAAGC TCAAAAATTG TACAATTGGT AGCTACTGAT
AATTTGAGCG CTGCATTGTA TGACAATGGA GATGTTTACG CTTGGGGTTG CTTCCGTTGC
AATGAGGGCT TGCTCGGTTT CTTGAGAGAA GAGATAAAAG TGCAGAAGTC TCCTTTGGAA
ATTAAGGAGT TGAAGAACAT TGTGCAATTG GCCCGCGGTA AGGATCATAT ATTGGCTCTT
GATGTTAAGG GTATTGTTTA TGCATGGGGT AACGGCCAAC AGTATCAGTT GGGACGTCGT
ATAATCGAAA GACACCGTTA TCGTTCTTTA GAACCTCAGC AATTTGGATT GTACAATATC
AAATATATCG CAAGTGGAGA TTTCCACTGT TTTGCAATTG ATCATGACGA CAAGGTTTAC
ACATGGGGAT TGAATCAATT TGGGCAATGC GCTTTGACAA ATTCAGATGG AGAATTAGAA
GATGGATCCT TGATTACTAA GCCAACATTG GTTCCTAGCT TGTCTGGTAA AGGGATTGTC
GAAATATCTG CAGGTGAACA CCATACATTA GCCCTTACAA GGGAAGGTGA TGTCTTGTCA
TGGGGCCGTT ATGACATGAA GGAAGTTGGT ATTTCTAAGG ACAGATTGCC TAAGTCAACT
TTTAAAGATG CACATGGAAA TGCAAGGTCT GTACCCACTC CTACCAAACT TCATTTTGGT
AAGGTGGAAG ATAATGGTGT CAAGATTAAG GAAATCGGAA CAGGTTCTCA TAACTCCTTC
GCTGTAACGG ATGATGGGTT TGTTTATTCG TGGGGTTTTG CTGATACGTA TGCTCCAGGG
TTAGGCCCAT TGGACGAAGA CGTTGAGATT CCCACCAGAA TTTTTAACAC AGCAACCAAG
TTTACTGATA TTAAATTAAT CGGAGCCGGG GGACAGTTTG TAGTCAGTGG TGGTGTTAAA
ATTGAAGATG AAGATGAACG CGAAGATAGA ATTGAAAAGT ACGAAGAAAT TGACGGCTAG
AAACGTTATC ATTTTTTTTT TGCGACAAAA AGTCTTGTTC AAGGCTGAAA ATAATTCCGA
CAAATGAATT GATATTGTAA AATTCCAGCA TTCTCTATTT AATAAAAGTT TTGATTTTAT
|
|---|
| Protein sequence | MVALERKRKS SSSTTSNGTK KLKSHVSSSF ILHSYSKLPD VNAFPKGRSE PLDIFVWGTG
SMCELGLGPS AKNKEVKRPR LNPFLTEEKL DGTKIVDFSV GGMHTLALDG KNRIWSWGGN
DSGVLGRDTS KVKEVLKDVD SNESEDDEDG DLNEAESTPG LVEGLPQIKS SKIVQLVATD
NLSAALYDNG DVYAWGCFRC NEGLLGFLRE EIKVQKSPLE IKELKNIVQL ARGKDHILAL
DVKGIVYAWG NGQQYQLGRR IIERHRYRSL EPQQFGLYNI KYIASGDFHC FAIDHDDKVY
TWGLNQFGQC ALTNSDGELE DGSLITKPTL VPSLSGKGIV EISAGEHHTL ALTREGDVLS
WGRYDMKEVG ISKDRLPKST FKDAHGNARS VPTPTKLHFG KVEDNGVKIK EIGTGSHNSF
AVTDDGFVYS WGFADTYAPG LGPLDEDVEI PTRIFNTATK FTDIKLIGAG GQFVVSGGVK
IEDEDEREDR IEKYEEIDG
|
|---|
| |