| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_65220 |
|---|
| Symbol | |
|---|
| ID | 4837644 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009042 |
|---|
| Strand | + |
|---|
| Start bp | 1412374 |
|---|
| End bp | 1417536 |
|---|
| Gene Length | 5163 bp |
|---|
| Protein Length | 1499 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640388959 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001382494 |
|---|
| Protein GI | 150863871 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.234519 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TGACAGTAAC GGTTTCTTTG CTGTTTTTCT TTCTGGTGAC ACTTTCTTCC GCAGAGAAAT
CTGGTGTATT TTGTCTATTC AGCCTACCAG ACTCTAGACG AGCAATATAA TAAGGCAGCA
TAGCCAGAAT TCAAGCTATA CAAATCTCCG AAGTGAGGCG ACGAACAACA AAAGAACACA
AACCACAGAC TATTCAAGAC ATTCAAGACT CTCTGAGACC AAAAGAACTC AGCATTAAAA
GCTTTCAGTG CTATCAGAAT TTTTCATACC TGAATCAACA AATCTAAGAT CTGTTTTTTT
CCGTCTATTC TTCGTCCTTG AACATCACTA GACTACCATA ACAACACACT GTTCACTACA
TTCTGCTCCA AGATAATCCT GATATAACTA ACCAATAGGT GAATTACTAT CATGACTAGT
CGTGCCACTC AGATCAGCAC GTCGTCTAGC GTGTATTCGC CTGTAGAATC AGAGTATGCA
TTCAAGAACA ACCAGACCTA TGCTCCGATC GAAGAAGAAT ACGAAGAAAA CGGCAACGAC
CACAATAGTA ACGAAAATGT ACCCAACACC AGCTACGCTG AAGAAAACGG GTTCAACCTT
GTCTACGGCA ATAACGCCAC TCATGACACT CACGACACTC GTAGTATATC TCTGTCTACG
TCTAGCTTTG ACATAGACCA GCCCATAATC AGACGCAACG GCAATATGGC CACGGACTTC
TCGTCCCAGA CATTCCAGAC ATTCCACACA GCTCAGGGAA ACTACTCTGA CTCCGATTTG
GAGTTGGATA GGGAACCAAG TCTCAGTCGT GAACCTAGCT TTACTTCTAT CAACGAGTCA
ATAATGCATA GTAATGTAAA CGACAGCAGT CTTGTTCAGC CTGAGCTTCC TGGTTCGTAC
GACAACGATG AAACACCTAA GTTGGACAGC GCAGCGCGAA TGCCGTCCGA CGGTTTGGAC
GATAAAACTC CCATCTTGGG CAACACCATG ACGTTTGAAT CCAGACCCAC TGACCCTAGA
AACAGTCTTG GGATCAGCAT CCAGCCACTT AACTTCGGTG CTAACAATAG ACGAAGCCAG
TTAACTCCTC TTCTTCCACA GCAGGAGCTT AGTACAAAAT TCCAGCGTCT TTCTGTAACC
CTTCAGCTGA AAACCCCGTC CGGTGACTCA TACGACTTCA TGAACTCTTT CCAACAGAAC
GTCCAGCAGG CCAACAACGA TGCTGACTCC AACAGATGGT CCAAGACGAG AACCAGCTTG
TACTACAAGA AGATACACGA GGCACAACCC AAAGACGATA ATGTAGATGA CGCTGTGGAC
GATACCGATA ACTGGACTCA AGACACATCT GACGAGGCCA AAGTCGACAA TGTAGAGAAG
TTAGTCAGAC GCGCGGACCA GGCTTCCGTA GACAGCACGA TCAGTAACCG ATCCAGCATT
ATCAGTCAGA GCAGCGAGTT CCCACAAGAC ACCACTAGAA TGACTGCTGG TGGAGCAGAT
GTAGACGACA AGAAGTTTCT CAGCCAGACG TCAAGTGGCA ACAGCTCGAC CAGCTTCAAC
TTCGACGTTA GCAGTAGCCA GATTCCTTCT TCTTATGCTA TCGATAAGAA CTTGCGGGTG
TCGAGAGTGT CGCCCACGAA GGTATTGAAG AAATCTGCTG TGGAAGACAT TCCCATCAGG
AAGGATCTTG TCCAGCGTTT CGAACGGATG TCGTCTAATA TGGACATGTC AGATCAGGAA
CGGAACGATC TCTATATTGC CAACTCTTGG TCAGGCTCAA AAATGGACTT GTCAAACAGA
TACAACGACT CAAATCCAAC AGAGTCGATG CTTGATCCCA AGAATGGACT TGTGGAATCT
ACCCAGCTTG ATCTGACCCA CGACATTCTT CAACTCAAGG AAGAGTCTAG ACCCCTGACG
ATGTCCCAGG GACCTTCTTT CTTCGAAGAT GACGAAGACT TGTCCGCCTT GTTCATCAGA
GCTATGCATC CATTTGATTC TTCAACATTG CAATCTGAAT CAGATGTTTC AATCTGTTTG
TCGTTTGATA AAGACGAAAT TGCATTTGTC CACACCATCG ACGATTCTGG CTGGGGGGAA
GTCACGTTGG TAGATAGCTT GCTGAGAGGC TGGATTCCCA TGAACTACTT CACTATATCC
ATTTCGGAAG ACGACGACTT GATCGAAGAA GAGGGCAGCG ACTCTCGTAT TCCAAATAGC
AAGTACTTGA AGCCACTCTT CCATGCCTGT GGGAAATTCC TCATGAATCC ATTGAGTCAC
AAGAACCGTC GTGGAAAATA TACTTTCTCT ATCAGAGTGA TCAACTCCAT CAGAGATGGT
GTGCGCTTGC TCTTGCAGCA GACCGATTGT TTATCTAGAT CGAACGAAAT CGTCACCAAG
AGACCCGTAG TAAGAAAAGC ACGTAAATCC TTGCTTGCTG ATTGGTACAA TCTCATGGTG
AAAGCCAACG AGTTCAAAGG TACTTCCAAC TTCAACAAGA TCGAAATATT GACCTTGATG
ATCTACCAGG TGACCAGAAA GGCGTGCAAG TTCTTGCAGG TATGGTCAGT AGAAAGTAAG
CAAATCATCA AGAGAGAGAA CGAGAAAAGG CTCCAAGAAG ATATGAGTGC CTATCCTTTG
TTGAATGCTC CTCCTTTGGC CAAGTACAGA GTTACAGAAA TCAATAGTAT CTTGTACTCG
TACTTAGGGA TAATCATCGG TAGATTGGAC TTAATCGAAC ACAACTCTGT TGGATGTAGT
CTTTTGGAAA CTATTGCTCA TCAGATTATC TTATTGTTAA GGGAATTACT CTTTATTTCC
AAGACTGGTT CAGATTTCTC ATCTGAGAAG CCGGCAGATT TGGACAGTTC GTTGGACTCA
TTATTATCTT TAGTGAGTGA TTTAGTGTCT AGCGTGAAAA ACTTGGTCGT CAAGACTTTG
AACGAGACCG AAGCGGACAG AAAGAGTGCA TTCAACCCAC GTAGTGCAGC TGGAAATGAC
TACTACTACA CTCAAGAAGG TGGTGATTTG ATTCAAATTG GTTCCAAGAT GGTTAGAGCA
ATTAGTACTA CCGTTGCTTC CATCAGAAAG TTGTTGGAAG TTACTGGAGA CTTCAGGTTG
AATGCTGAAA GATCTTATCC TGACTATTCC AAGATGAGAA TTGAGCCTGA AGAGTTCATA
AGAAAGTGCT CAATAGGTAT CACAAGACCT TTGGCGTTCG ATAAGAATAC TTTGAGAGTC
GACAAGTCTA GAGCTCGATC CAACAGATAC TCTATGATCA GATCTGGAAA GACCGGTGAA
TTAGGATTGA CTTCTAGTGG TGCAAACTTG TTATACGATG CCATGAATAG TGATAGCGAT
GGCTCATTCT CCTTATCTGA TTCAGCATTT GAACCGTTTA CTCACACGGA AGGTGAGTCT
AGCATCAGTG ATGAATTGTT GGTAGACTCT AATGGTAACT TACTTGGTGC TTCTTTCAAG
GGTTTGGTTC ACACCTTGAC AAATGAAATA ACCCCACCAG AATACTTTTT TGTTTCTACT
TTCTTTATTT GTTTCAGAAG CTTTGCTAAT GGTATCGATT TGTTGGAGGA GTTGATCACG
CGATTTGATA TTGAAAACAA GTCAATCAAG GATCAAACCA AGGCTGATGT CACTGCAGAA
CTTAAACTCA AGAAGAGAAG AAGATTAATT GTCAAGATGT TCCAGTTGTG GATGGAATCT
TACTGGAACC AGGAATTAGA CTACAGCTTG TTGACCACTT TAATTAACTT TTTCAATGAG
GGTATTTCCA TTTACTTGCC TTTGGATGCT ATGAAACTTA TTGAAATTGG TGCAAAACTT
TCAACAAGAC CATTGATCGA GAATAAGGTT GCTAAGAAAT CTGTATCAAG CATGCAATTG
GTGGAAAGAA GTATTACCAT TACTAGAATT AAGAGAAAGA ATCTTGTTTC CAGTGCAGAC
AACACTATTA ACAACAGGTA CTCTATGGTT GATGGTTACG AACTTTCAAA AATCAATACC
AATTCTTCAA CAGCAAGTTC ATTGAAATCA ATTTCATTAC CAATGCCATT AGGAGTTGGA
AACCAAACTT CCTCATCCAA TTCGTTGTTG AGCAAGAACC AGATTTCCAC TATTGAAAAG
GTAAATTTAA CTTACAGAGC CATCTTGGGT AGTAGCTGGT GTGCTCAAAA GTACATAAGC
GATAAGGAGT ACATTCCCTT GAGCTTGAAC ACAATTCTTC CAAATTGGTT CAGCATTTTT
GACCAAAGCT GGGTATTGTC AAACTACAGG CCCAATCTTT TGGATTTCAA TGGGTTGGAA
TTAGCCAAAC AATTAACAAT TATTGAGTCT CACATTTTCT GCGCCATCAA GCCTGACGAA
CTTTTGAATG ATAATTACTC TACAAAGAGA GCCCACTTGA AGTTGGCACC AAATGTGAGA
CAATCCTTGC TTTTCACTAA CTGCTTATCG GAATATGTAC TTGAATCCAT TTTGCAACCG
AAGATCAACC AGAAACTCAG AGTTAACATA GTGAAGACTT GGTTGAAGGT GGCTATTTCT
TGTTTGTACT TGAGAAACTT CAACTCGTTG GCAGCCATTG TGACTGCTTT GCAATCTCAC
TTAATCACCA GATTATCCAA AGTGTGGAGC GATCTCTCCG AGAAGTACAC CGAATTGTAC
GACTACTTAT CAACCATTGT CCGTCCAGAA AAGAACTACA ATATCTACAG ACCAAAATTG
AGGAACTTCT TGGTATCCAA CGATTATAAT ATTCCAATTG TTCCTTACTT TTCGTTGTTC
TTACAGGATC TTACGTTTGT CAGCGATGGT AATTCCAACC ATAGAATGGC CAACACTTTC
TTGAATCAAA AGTTGATTAA TATTGACAAA TATTTGAAGA TTTCCAGGAT TATTGCTGAC
ATTGAAAGTC TACAGACCCC ATATGTAGAC TACAAGAGTG GCCATAGAGA CGACAGGAGA
CACAGTTTGG CATTCTTGAA TAATCAAAGA GTCAGTGATG TTGAGGACTA CAGTATTATT
CCTGTTCCAG CATTGCAAGA ACTTATTTTA TTGGAGTTAT GGAAGGTCAA CCAATTGAAC
AAGACCGAAG AAGACAGAGC CTGGAAATTG AGTTGTTTGA TACAACCCAG AGAGGCAGTA
TAA
|
|---|
| Protein sequence | MTSRATQIST SSSVYSPVES EYAFKNNQTY APIEEEYEEN GNDHNSNENV PNTSYAEENG
FDIDQPIIRR NGNMATDFSS QTFQTFHTAQ GNYSDSDLEL DREPSLSREP SFTSINESIM
HSNVNDSSLV QPELPGSYDN DETPKLDSAA RMPSDGLDDK TPILGNTMTR SQLTPLLPQQ
ELSTKFQRLS VTLQSKTPSG DSYDFMNSFQ QNVQQANNDA DSNRWSKTRT SLYYKKIHEA
QPKDDNASVD STISNRSSII SQSSEFPQDT TRMTAGGADV DDKKFLSQTS SGNSSTSFNF
DVSSSQIPSS YAIDKNLRVS RVSPTKVLKK SAVEDIPIRK DLVQRFERMS SNMDMSDQER
NDLYIANSWS GSKMDLSNRY NDSNPTESML DPKNGLVEST QLDSTHDILQ LKEESRPSTM
SQGPSFFEDD EDLSALFIRA MHPFDSSTLQ SESDVSICLS FDKDEIAFVH TIDDSGWGEV
TLVDSLSRGW IPMNYFTISI SEDDDLIEEE GSDSRIPNSK YLKPLFHACG KFLMNPLSHK
NRRGKYTFSI RVINSIRDGV RLLLQQTDCL SRSNEIVTKR PVVRKARKSL LADWYNLMVK
ANEFKGTSNF NKIEILTLMI YQVTRKACKF LQVWSVESKQ IIKRENEKRL QEDMSAYPLL
NAPPLAKYRV TEINSILYSY LGIIIGRLDL IEHNSVGCSL LETIAHQIIL LLRELLFISK
TGSDFSSEKP ADLDSSLDSL LSLVSDLVSS VKNLVVKTLN ETEADRKSAF NPRSAAGNDY
YYTQEGGDLI QIGSKMVRAI STTVASIRKL LEVTGDFRLN AERSYPDYSK MRIEPEEFIR
KCSIGITRPL AFDKNTLRVD KSRARSNRYS MIRSGKTGEL GLTSSGANLL YDAMNSDSDG
SFSLSDSAFE PFTHTEGESS ISDELLVDSN GNLLGASFKG LVHTLTNEIT PPEYFFVSTF
FICFRSFANG IDLLEELITR FDIENKSIKD QTKADVTAEL KLKKRRRLIV KMFQLWMESY
WNQELDYSLL TTLINFFNEG ISIYLPLDAM KLIEIGAKLS TRPLIENKVA KKSVSSMQLV
ERSITITRIK RKNLVSSADN TINNRYSMVD GYELSKINTN SSTASSLKSI SLPMPLGVGN
QTSSSNSLLS KNQISTIEKV NLTYRAILGS SWCAQKYISD KEYIPLSLNT ILPNWFSIFD
QSWVLSNYRP NLLDFNGLEL AKQLTIIESH IFCAIKPDEL LNDNYSTKRA HLKLAPNVRQ
SLLFTNCLSE YVLESILQPK INQKLRVNIV KTWLKVAISC LYLRNFNSLA AIVTALQSHL
ITRLSKVWSD LSEKYTELYD YLSTIVRPEK NYNIYRPKLR NFLVSNDYNI PIVPYFSLFL
QDLTFVSDGN SNHRMANTFL NQKLINIDKY LKISRIIADI ESLQTPYVDY KSGHRDDRRH
SLAFLNNQRV SDVEDYSIIP VPALQELILL ELWKVNQLNK TEEDRAWKLS CLIQPREAV
|
|---|
| |