| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_62830 |
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| Symbol | SPB4 |
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| ID | 4839908 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009046 |
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| Strand | - |
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| Start bp | 318927 |
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| End bp | 320780 |
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| Gene Length | 1854 bp |
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| Protein Length | 617 aa |
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| Translation table | 12 |
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| GC content | 40% |
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| IMG OID | 640391223 |
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| Product | ATP dependent RNA helicase |
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| Protein accession | XP_001385748 |
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| Protein GI | 150866225 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0490658 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAACAA AGAAAGGTTC ACTCGACTGG AAAAATCTCC AGTATGACCT CCAACCATGG
ATCAAAGAAG CGATTGCCTC GTTGGGGTTC CCTACCATGA CCCCAGTACA AGCTGCTACG
ATTCCTTTAC TTAGTGGGAA CAAAGATGTT GTCGTAGAAG CAGTGACTGG TTCAGGCAAA
ACTCTTGCAT TTGCTATACC CGTCTTACAG AAAGTCTCGA ACCGTTTGTA TGACTCACAA
GAAGAAGGCG AAGCCCCCGA AAAAGTTAAA CAAGGACACA TGCTTGCTAT TGTATTATCT
CCTACTAGAG AACTCGCTAG TCAAATCCAA TCCGTATTCA ACAATGTCAT CGAATATTTA
CCTGAAGATA AAATTCCTAT TAAAACACAG TTGCTTGTGG GTTCCCTTTC CACAGTGAGA
GATGACTTGG ATCGTTTCTT GAAAGATAAA CCTCATATCT TGATTGCCAC ACCTGGTAGA
ATGCTTGACT TCATGTCTTC ACAATATGTA AAAATGAATT CGGTAGAGAT AGCTATTTTA
GATGAAGCAG ACAAGCTATT GGACTTCTCA TTCGAAAAGG ATGTTGTTAA CATCCTAAAG
AGATTACCAA AACAAAGAAG AACGGGACTT TTTTCAGCTA CTATTTCAGC TGCTGGAAAT
ACAATTTTTA GAGCAGGCAT GAACAACCCA GTGAAGGTGG CTGTGAAGTC CAAGTCTACC
ACTGCCAACT CAGCTCCTTC AGCATTGCAT ATCTCCTATC TAATGATAGA ACCAGAAAAA
AAGATCACTA CTTTAATAAA GTTATTGCAC GATTACAGAT ACAAGAAGTG TATTGTATAT
TTCCCTACCT GTACATCTGT TAAGCACTTT TATTCTATCT TCCAGAAAAT TGTCAATGGA
AATGACAACA CTGAATCGTT CAAATTCTAC TCATTACATG GGCAGCTTGC TACCAAACCA
AGATTAAGAA CATTGCAAAG TTTCACGGAT GGAGATGTGG CATTGAACAA ACATATCTTG
ATGACCACAG ATGTAGCAGC CAGAGGTATC GATATCCCAG ATGTAGACTT GGTTATCCAG
TTAGATCCTC CAACTGATCC AGATGTGTTT TTGCACAGAT GTGGTAGAAC TGGAAGAGCC
AATAAGGTTG GGCGTGCTAT TGTCATGTTA AACGATGGTA GTCGAGAGCT AGACTATGTT
GATTTCATGG AAGTGAAGGG TGTAGCAATG CAAGAAATGC CAACGCCAGA CTTGAACCAG
AGTGACCATC AACAGTTCCA AGACAAACTC AGAAAGTATA TGCTTGATGA CAGGGCCCGC
CATGAAATTG CAATCAAGTC GTATGTTGGA TTTGTCAGAT ACTACACCAA ACATATGGCA
ACTTCTATCT TCAGATACCA GACTTTGGAT TATCTTGGGA TAGCTAAGAT GTATGGGTTG
TTGAGATTAC CCAAAATGCC CGAGTCGAAA TATATACCTA ATGATAATAT GCCTGATGAT
GGATGGCTAG GCGAACCCAT CGATATGGAC AAATATAGTT ATGCAGATAA CCAGCAGGAA
GCATCGAGAT TGGAAAACTT GAATGCAGAA AAGATCAAGA AGATAGCTGA TGCAAAGAGG
AGAAAGGAGT TGAAGGTCAA AAATGAAGCA TGGTCCAGTA AGACAGAAAC AAAGGAAACG
AAACAAGAAA GACGGGAGAA GATGAAGAGA AAAAGAGAAG CCATTGAAAA ACAGATCATG
GAAGAATCTT CGGACGACGA AGAGACAAAA GTCGACTGGA AGGACATCGT AAAGAGTAAC
AAGAAGAAAA AGGCAAACTC TGGCCTGATG CAAGGTTCAT TCGATGATTT ATAG
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| Protein sequence | METKKGSLDW KNLQYDLQPW IKEAIASLGF PTMTPVQAAT IPLLSGNKDV VVEAVTGSGK
TLAFAIPVLQ KVSNRLYDSQ EEGEAPEKVK QGHMLAIVLS PTRELASQIQ SVFNNVIEYL
PEDKIPIKTQ LLVGSLSTVR DDLDRFLKDK PHILIATPGR MLDFMSSQYV KMNSVEIAIL
DEADKLLDFS FEKDVVNILK RLPKQRRTGL FSATISAAGN TIFRAGMNNP VKVAVKSKST
TANSAPSALH ISYLMIEPEK KITTLIKLLH DYRYKKCIVY FPTCTSVKHF YSIFQKIVNG
NDNTESFKFY SLHGQLATKP RLRTLQSFTD GDVALNKHIL MTTDVAARGI DIPDVDLVIQ
LDPPTDPDVF LHRCGRTGRA NKVGRAIVML NDGSRELDYV DFMEVKGVAM QEMPTPDLNQ
SDHQQFQDKL RKYMLDDRAR HEIAIKSYVG FVRYYTKHMA TSIFRYQTLD YLGIAKMYGL
LRLPKMPESK YIPNDNMPDD GWLGEPIDMD KYSYADNQQE ASRLENLNAE KIKKIADAKR
RKELKVKNEA WSSKTETKET KQERREKMKR KREAIEKQIM EESSDDEETK VDWKDIVKSN
KKKKANSGSM QGSFDDL
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