| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_60418 |
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| Symbol | DPB7 |
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| ID | 4839286 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009045 |
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| Strand | - |
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| Start bp | 1598799 |
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| End bp | 1601147 |
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| Gene Length | 2349 bp |
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| Protein Length | 733 aa |
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| Translation table | 12 |
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| GC content | 41% |
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| IMG OID | 640390601 |
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| Product | ATP-dependent RNA helicase DBP7 (DEAD-box protein 7) |
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| Protein accession | XP_001385306 |
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| Protein GI | 150865902 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.174628 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGAAG ACGACGGTTT GTTGTTAAAT TTTGCAGTTC CGGATGTTTC GGTGTCACTG
GGCTCGAACA AAAGAACAAC TTCCAAAGTT ACCGGTGGAA AATGGAAAGA TCGTCGTAAA
CTTCAGCTCT CATTACAAGG AAGAGGAAGA AACCAAAAGA AAGACAGATC TGCCACCGGA
GTAAATAATG TTTCTGTTAC TTCAAGACTT GATAACAACA ATAACAGCCA TAATCAGAAA
GACGATGGAA AAAAACACGA AAATGATGAA TCAAATGATT CTAAAAAGAG ACCTACTATT
GAGCCCATTC ATGGCCCTAC TTCCAAGATG ATCAAGTTTT CTGAGTCGAA GGGGGAATTT
GGTGGAAAGA ACAATTCGTA TGTATCATCA TTGTTCACAT CCAATCAGAG CAGTTCACAG
TTAAAGGTGA CGAAAGAATC AGACGAAAAA ACATATTTAC CATCTAATGC TCCTGTTGAA
GATGCATCTA CTTTTGAAGG GTTGGGTATC AACGAAAGAC TTTCTAAGCA TTTGACAGAA
ACTTTACGAT TCAAAAATCC TACCAAAGTA CAAAAGTCGG TCATCCCAAC CATGCTTTCT
ACAGAGAGAG ATCTTTTCAT CAAGGCTCAG ACTGGTTCTG GTAAAACATT GTCTTTCCTC
TTGCCAATTT TCCACAAGCT TATGATGGAA AACAAGCATA AGATAAACAG AGATTCTGGT
TTATTTGCTG TGATTCTTAC CCCTACTAGA GAGTTGGCAA CTCAAATCTA TGGAGTTTTG
GAAACTCTCA CAAGATGCTA CCATCACATC GTTCCTGGTA TTGTTATAGG AGGTGAAAAG
AAGAAGTCCG AAAAGGCACG TATCAGAAAG GGAGTTAATA TCTTGGTAGG AACTCCTGGA
AGATTGGCTG ACCACATGGA AAATACCGAA TCTTTGGATA TCAGCCAGTT AAGGTGGCTC
ATTCTAGATG AAGGTGATAA GTTGGTTGAA TTGGGCTTTG AAGAGACTAT AACCAAGATC
ACCAACTTGA TTACAAGAAA CTCTCAGATC ATGGAGTCGA TGCATAAATG GCAGGGATTG
CCTGTTAGAA GAATCAACTT GTTGTGTTCC GCGACGATGC AGAATAACGT GGAAAAGTTG
GGTAGTATTA TCTTGAACAA CCCAGAAATG ATCAGTGTAG ATCACATTCC AGGAACCATT
GAGTTTGAAG GTGACGGCTC TTCTTCTGGA AAGCACTCAG AAGAGGTGAC TGCACCAGAC
CAGTTGATCC AAAACGTAGT CGTGGTACCT CCAAAGCTAA GACTCGTTAC CTTAAGTGCT
ATCCTCAAGA AGATTTCATC AGATATGAGT GGAACTAACA ACTCCACAAG AACTATTGTC
TTTTTCTCGT GTTCTGACTC TGTCAATTTC CATTTCGATG TGTTCACTAG AGGCGGAAAT
ACCTTCAAGA AGGTCAAAAA TGATGAGTCT GGAAAATTAG AAACTGTAGA AGTAGAAAAT
GACAGTGATG ACGATAAGAA AGATATGCAA GAAGAAGAAG AAAAAGGTGC AGTGACAGCT
CCTTTGATTG GACAAGGCAC TGCCGTCTAT AAGCTTCATG GCTCATTATC GCAACAGACT
CGTACTTCTA CCTTGCAGGC ATTTATTAAG GACAGTAAGT CGAATCATTC TATTCTTTTC
TGTACTGATG TAGCATCGCG TGGATTGGAT CTACCAAATA TTGCATCCGT TATTGAATAC
GATCCTCCAT TTACAATTGA TGATCATTTG CATAGAATTG GTAGATCGGC CAGAGTTGGT
AAGGAGGGTA CAGCTACGTT GTTCTTGTTG CCTGGCAACG AAGAAGGATA TGTAGATGGT
AAATTGCAAG TAGTTCATCC TAAGGAAGGT AACTTGAGAA TTGTAAATTA CGAGAACTAC
TTGAAAGATG GCTTCTCTGC CAAGTCTAAC AACGAAGATA CCAAGAAGAA ATCCAAGGAC
CCTAAGAGCA GAGAAGGAAA GTGGGATATT CATGCCACCA CATGGCATCT TGACATTGAA
AGATGGTTGT TGGAGGATTC TGGCGCCCAC GACAAGGCAG TGCAAGCTTT CACGTCGCAT
ATCAGAGCAT ATGCTACCCA CTTGTCGTCA GAGAGAAACT ATTTCAATGT CAAATTGTTG
CATTTGGGCC ATTTGGCTAA AAGTTTCGGT TTAAGAGAAA CACCAAAGAA GTTGGGTAAA
TCTGTTGAAT CCAACAGTGG CATCCAGGGA GCATCCAAGA AGACCAAGAA GGAGGATCCC
AGAAAGAAAA TGTTGAGAAT GGCAAAGATG GCTCTCAAGT CCAACAGTGA TGAATTTAAC
TACTCATAG
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| Protein sequence | MDEDDGLLLN FAVPDVSVSS GSNKRTTSKV TGGKWKDRRK LQLSLQGRGR NQKKDRSATG
KDDGKKHEND ESNDSKKRPT IEPIHGPTSK MIKFSESKGE FGGKNNSYVS SLFTSNQSSS
QLKVTKESDE KTYLPSNAPV EDASTFEGLG INERLSKHLT ETLRFKNPTK VQKSVIPTML
STERDLFIKA QTGSGKTLSF LLPIFHKLMM ENKHKINRDS GLFAVILTPT RELATQIYGV
LETLTRCYHH IVPGIVIGGE KKKSEKARIR KGVNILVGTP GRLADHMENT ESLDISQLRW
LILDEGDKLV ELGFEETITK ITNLITRNSQ IMESMHKWQG LPVRRINLLC SATMQNNVEK
LGSIILNNPE MISDGSSSGK HSEEVTAPDQ LIQNVVVVPP KLRLVTLSAI LKKISSDMSG
TNNSTRTIVF FSCSDSVNFH FDVFTRGGNT FKKVKNDESG KLETVEVEND TPLIGQGTAV
YKLHGSLSQQ TRTSTLQAFI KDSKSNHSIL FCTDVASRGL DLPNIASVIE YDPPFTIDDH
LHRIGRSARV GKEGTATLFL LPGNEEGYVD GKLQVVHPKE GNLRIVNYEN YLKDGFSAKS
NNEDTKKKSK DPKSREGKWD IHATTWHLDI ERWLLEDSGA HDKAVQAFTS HIRAYATHLS
SERNYFNVKL LHLGHLAKSF GLRETPKKLG KSVESNSGIQ GASKKTKKED PRKKMLRMAK
MALKSNSDEF NYS
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