Gene PICST_57730 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_57730 
Symbol 
ID4838333 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009043 
Strand
Start bp110272 
End bp111123 
Gene Length852 bp 
Protein Length265 aa 
Translation table12 
GC content45% 
IMG OID640389648 
Productpredicted protein 
Protein accessionXP_001383300 
Protein GI150864473 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.10969 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTCCTT CGATACTGGA GGTCCGAGCT TCGCAGTCTA AAATCAACGT CTATTTAGAT 
GAGTTGAACT CGAATCTCGA GGAAAGGGAC CGGTTAGTAG AGGTTTTACG GCTAACTCCT
TCTGCAAACG ATAACTACGA GCTAATCAGC CTACTCCAGA AACTCGTCAA ATACTTCAAA
TATCTCCAAC AGGACCTCAT ATCGTTGATC AAGGTAGGAG AGAATGTCGA ACAGTACATA
AATCAGTTCC GGGAAGCTGT AGCCAAATAT GAAGACGTGC ACGAGAAACT CGCAGGGGAC
TCTTCAATCA GTGTATCCGA ATACCATTTC ACGCCCGCAG AATTTCCACA AAGAAAGACC
CCCATTTCAG TTATCAGTGG GTCTGGAGCT GCCCGTGAAG TTCTGAAGTC CGTGCGCTTT
CAGGAGGACA TTTTAGATAA GGATGCTGAC GATCATTTCC GTAACGAGTT GATGGGAACA
AGAAATTTCA AGCCTTATTC GGACGAGGAG TCTTCTAACA ACACAGATTC TGAGTCGTTC
GATGCCCAGA CGAACCAACA TCTTTTTGCT CAACACCAAC AGACTATTCT AGAACAAGAT
CAGAGTCTAG ATGTGCTCCA CCAGCTGATT ATTAGACAGC ATACCATGGG CCAGAGCATT
AACTCGGAGC TCGATGACCA TCTCATTCTC CTCAACGACT TGGAGAATGG TGTTGATGAT
GCCAATTACC GTTTGAATAC CGCTGCCAAT CGGTTGCATG AATTCCGGAA ACGGGTTCGT
GAAAACGGTA GTTTGGTCAC AATCATTGTT CTCACAGTGA TCTTGATAAT GTTATTGGTG
GTGTTGAATT AG
 
Protein sequence
MAPSISEVRA SQSKINVYLD ELNSNLEERD RLVEVLRLTP SANDNYELIS LLQKLVKYFK 
YLQQDLISLI KVGENVEQYI NQFREAVAKY EDVHEKLAGD SSISVSEYHF TPAEFPQRKT
PISSVRFQED ILDKDADDHF RNENFKPYSD EESSNNTDSE SFDAQTNQHL FAQHQQTILE
QDQSLDVLHQ SIIRQHTMGQ SINSELDDHL ILLNDLENGV DDANYRLNTA ANRLHEFRKR
VRENGSLVTI IVLTVILIML LVVLN