Gene PICST_57505 details

Gene Information

• Locus tag: PICST_57505
• Symbol: DUR5.3
• ID: 4837703
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Scheffersomyces stipitis CBS 6054
• Kingdom: Eukaryota
• Replicon accession: NC_009043
• Strand: -
• Start bp: 889075
• End bp: 891081
• Gene Length: 2007 bp
• Protein Length: 668 aa
• Translation table: 12
• GC content: 41%
• IMG OID: 640389018
• Product: urea transport protein
• Protein accession: XP_001383804
• Protein GI: 150864823
• COG category: [E] Amino acid transport and metabolism; [R] General function prediction only
• COG ID: [COG0591] Na+/proline symporter
• TIGRFAM ID: [TIGR00813] transporter, SSS family

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.20443
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 14
• Fosmid unclonability p-value: 0.667471
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCGGACA CTGATACTGT ATTTTTGCTT CCAAAAGGTG CCGGTTATGG GGTGTTGCTC 
GGTGTTGGTG CCGTTTTTGC AATCGGTATG ATCTTAACTA CCAAATTCTT GCAGAAGTAT 
CTCAACGAAA ATGCAACTTC TACGGAAACT TTCTCTGTTG CTGATAGAAG TGTGAAGCGT 
TTCTTGGCGT GTTCTTCTGT TTACGCTTCT TGGTCTTGGG CCGATGAAAT TTTGCAGACA 
GTGTCTATGA TCTACAACTA TGGTGTTCAA GCCTCGTTTT ACTATGGGGC CGGTTTATCG 
GTGCAGATGT GCGTTATGGC TCTTATTGGT ATCAGTGCTA AAAAGAGAGC TCCTCAAGCT 
CACACTTCGC TTGAAATTGT CGGTTTGAGA TATGGAAAGG CTACTCATAT ACTTTTCTTG 
TTCCTCTGTT TGGTTACCAA CTTGATTTCA TGTTCCTCTA TGCTTTTATC TGCTAGTGGT 
GCCATTTCGA TCATTTCTGG AAACCTTTCA ATTGTTGCAA GTACATTACT TATTCCATTC 
GGAGTTTTAT TGTATACTAC CTTTGGTGGG TTGAAAGCAA CATTCTTGAC TGATTACGTT 
CACTCTTTCG TCTTGTTGTT GATTTTGATT GTCATCAACA CTAAGGTTCT TGCTTCCAAG 
GAAATCGGTG GTTTGAACGG CCTTTATTCT CAATTGTTAG AACACTCTCA AGATAGATAT 
ATCGAAGGCA ATTATCAAGG TTCTATTCTT ACTGGTAAGT CTCAAGGTTC TATCATCTTC 
GGTTTGGTTT TGACTTGTGG TAACTTTGGT TTGACTGTCA TGGACTCTTC TTTCTGGCAA 
AAGTCGTTCT CTGCTGAAGT AAAGGCTACT GTTCCTAGTT ACTTGGGTTC AGCCGTCTTG 
ATTTTTGCAA ACACTTGGCC AATTGGTGCT ATTATCGGAG GTGCCAGTAT CATCTTGCAA 
GGCCATCCTA GCTTTCCAAC CTTCCCAAGA AAGATGACTC AGTTCGAAAT CGACTCTGGC 
TTTGTTCTTC CTTATACTGT CAAAGCTGTT TTGGGTAATA GTGGTGTTGG TGCTGTCTTG 
TTGACTGTCT ACCTTGCTGT AACATCTACC TCGAGTGCTC AAATGATTTC TGTTTCGTCG 
ATCTTATCCT TCGATATCTA CAAGAAGTAC ATTAACCCTC AAGCTAACAA CAAGCAGATG 
ATCCGAGTTG CTCATTTCGG TGTTGTCTTT TTCGGCTTGT TTGCTGCTGG TTTCACACTT 
ATGCTTCACT ACGTTAATGT TAACATGACA TGGATGGGCT ACTTCATGTC CATCGTCATC 
TGTCCAGGTG TGTTCCCACT TATTTTCACT GTTACTTGGG ATAGACAAAC CACAATCGCT 
GCCTTTGTCG CTCCTATTAC CGGATTGGTC TTCGGTTTCG CCGTATGGAT CACTACCACC 
AATAAACTCT ATGGAGAAAT TACTATCGAC ACTCTTGGTA TGCAAATCCC TTGTCTCTAC 
GCTTCCTTGA CTGCCTTGTT CCTTCCTGCC GTTGTAAGTA TTATTCTCAG TTTGACTGTT 
TTCCCAAAGA AATTTGACTG GAAAGAATTG CTGGAAGCTA AGCTTTTGAT CAAGGCTACG 
GGATCTGAAT CTGAATCTGA ATCTGAAAGT GAAGGTGAAA AGTCTGCCAT CAAAGAAAAG 
TCCACCATCG AAAATGTTCA GGTTTTCACA GTGGAAGAAG ACTTAGGAGT TCGTGCAGCT 
GATCCAGCCG AGTTGAATTT CTATTCCAAA GTTGCCAAAA TTGGTGTTGT TGTTGGTTTG 
TTGCTTACAT GGGTGTTATG GCCATTGCCA TTGTACCGTG ATTGGATTTG GTCTGCTGCA 
TACTACAAAG GTTATGTTGT AGTTGGGTTA ATTTGGTTAT ACGTTGCCTT TATCATCATT 
GGGTTGGCTC CTATTTGGGA AGGTCGTCAT GCTATCAAGA CAGTCAGTAA TGGAATCTAT 
AGAGATTACA TCAAACGATC TAAGTAA 

 

Protein sequence

MSDTDTVFLL PKGAGYGVLL GVGAVFAIGM ILTTKFLQKY LNENATSTET FSVADRSVKR 
FLACSSVYAS WSWADEILQT VSMIYNYGVQ ASFYYGAGLS VQMCVMALIG ISAKKRAPQA 
HTSLEIVGLR YGKATHILFL FLCLVTNLIS CSSMLLSASG AISIISGNLS IVASTLLIPF 
GVLLYTTFGG LKATFLTDYV HSFVLLLILI VINTKVLASK EIGGLNGLYS QLLEHSQDRY 
IEGNYQGSIL TGKSQGSIIF GLVLTCGNFG LTVMDSSFWQ KSFSAEVKAT VPSYLGSAVL 
IFANTWPIGA IIGGASIILQ GHPSFPTFPR KMTQFEIDSG FVLPYTVKAV LGNSGVGAVL 
LTVYLAVTST SSAQMISVSS ILSFDIYKKY INPQANNKQM IRVAHFGVVF FGLFAAGFTL 
MLHYVNVNMT WMGYFMSIVI CPGVFPLIFT VTWDRQTTIA AFVAPITGLV FGFAVWITTT 
NKLYGEITID TLGMQIPCLY ASLTALFLPA VVSIILSLTV FPKKFDWKEL SEAKLLIKAT 
GSESESESES EGEKSAIKEK STIENVQVFT VEEDLGVRAA DPAELNFYSK VAKIGVVVGL 
LLTWVLWPLP LYRDWIWSAA YYKGYVVVGL IWLYVAFIII GLAPIWEGRH AIKTVSNGIY 
RDYIKRSK