| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_54439 |
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| Symbol | CHL1 |
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| ID | 4836691 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | + |
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| Start bp | 224925 |
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| End bp | 227432 |
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| Gene Length | 2508 bp |
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| Protein Length | 835 aa |
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| Translation table | 12 |
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| GC content | 40% |
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| IMG OID | 640388006 |
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| Product | YPL008W (CHL1)-like protein |
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| Protein accession | XP_001382279 |
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| Protein GI | 150863715 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1199] Rad3-related DNA helicases |
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| TIGRFAM ID | [TIGR00604] DNA repair helicase (rad3) |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.106037 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAACTT CGATATGTTC GCCAGAAAAC CGATATAGTC ACCCCTACAA GCCGTATGAC
ATTCAGATAC AACTTATGGA TGCCATTTAC GACACCATCG ACAACGGTTA CAAAATCGGA
CTCTTTGAGA GTCCTACTGG GACAGGCAAA ACCTTATCTA TTATTTGCTC TACCATGACG
TGGCTCCGCG ATTACAAGCG GGAGAATGTA TTTCAACCTA TGGCTGGTTT AGATGGAAGT
GATACAGATG ATCTGGATTC AGACGATGAG CCAGAGTGGG TCAAGAAAGC ATATAGAGAT
ACGATAGTTC TGAGATCAGA GAACAAGATG GTAGATTACG AAATGTACCT TGAAAAGATC
CAGAACGAGT ACGAGAACAA CATACAAACT GCTGGAAGTA TTAAAAGCAG CCGACCACCT
AAGAAAAAGA GGTCTACTGC AAAGAAACAA GAGCTCCACG ATGAAGACTT CTTGCCCGAA
GACTACTATA GTGATTCCGA AGTTAAGCCG AATGCTGATA AGCTCACAGT TCTTGAGTCT
GAAATTTCGC AATTGTTAGA CAAAGTGAAT GGAAGGACGG ATGAGATTGA GATGACTAAC
GATTGCCCTG TAAATATATA CTTTTCCTCG AGAACTCATT CGCAACTTAA CCAATTTGCT
CATCAATTGG CATTAACTAA ATTTCAATCA TCGTTTAAAG GAGTAGAAGA AAGAACAAAG
TACTTGCCTA TTGGTTCTAG AAAGCAACTT TGTATCAACG AAAAAGTCAA GAGCTTCTCG
AAAAACGATC TGAACATAAA TGATGTCTGT GTAGACCTCC AGAAATCCAA GGAAGGATGC
CAATTTCTTC CCAAGGACTA CCTAAATTCG TCTTTAACGA AAAAGCTTTC GGATCTCAGT
TTGTCTAAGA TCCATGACAT TGAAGAAATC GCAGACTTAG GTTCAAATAT GAAGGTATGT
CCCTACTATC TGGTCAGAAA GGGAGTGGAA ATGACAGAGA TAATATCGTT GCCGTACCAG
ATTCTACTTC TGGAGTCTAC GAGAGCCATT CTCAACTTGC AAATCGAAGA TTCCATAGTT
GTAATCGATG AAGCACACAA CTTGATGGAT ACAATCACGT CGATGCACTC AGTATGTATC
ACTATTGGCG AAATGAATAG CATTATCAAA GCTCTTAAAT TCTACCTCGG CAGGTTTCTT
AAGAAGTTGA ACAGTGGGAA CAGAATTCAC TTGATGAAGC TCATCAAACT CTGCCAGTTG
GTGATTTCAT TTATTCAGAA ACTGGAGAAA TGCAACAATA TCAAGGTTGG AAACGAAATC
AATACAAGCG ATATCTACCA GAACTCCACA GGAGATATGT TGAATATCCA CATCTTGGAA
GCGTTCCTTG CGAAATCAAA AATAGCATAC AAGATTGAAT CGTACATGGA AAAGGTTGCT
GAAAATGAAA ACGAACAAGC GAAAACTAGT AGCTCTAATC CGCTTTTATA CAAAATTGTT
CAATTCTTGA AGTGTTTGGT CAACCCTTCC AAGGAAGGGA AGTTCTTCTG GGACTCAACC
AACGGCATTA CATCCATCAA ATACATGCTT TTGGACCCTA GTTCTGTGTT CAAGGATATA
GTTTCCAAGG CCCGCTGCGT GATACTATGT GGGGGTACTA TGGAACCAAT GTCAGAATTC
AAGAACTTCT TGTTTCCATA TGTTGAAGAC AAGAAAATCA AATCCTTCAG TTGTAATCAT
ATTATACCAC CTGACAATTT GAAAGTGTAT CCTGTATCTT CTCAAAACAA TGTTACTTTA
GAATTCCTGT TTGACAATAG AAACAACCCG TTGATGATCG AGGCTCTCGG AGCTTCGATC
GTTCGTATCT GCCAACTGGT ACCGGATGGA GTTGTGGTTT TCTTTCCAAG TTACAAGTAT
ATGAATCACA TATTGTCGAT TTGGAAGTCT ACAGATGTAT TGACTCAGAT AGAGTCACAG
AAGAAACTCT TTGAAGAGCC TACAAGTGCA TCACAAGTCC AGACAATTCT AGCAGACTAT
GCGAACACAA TTAAAGAAGA GAAAAAGGGT GCAATTCTAT TCTCAGTTGT GGGGGGAAAG
ATGTCAGAAG GGATCAATTT TGCAGATGAA CTAGGAAGAG CAGTAGTGAT GGTGGGGTTA
CCATATCCAA ACGCTTATTC TGGAGAAATT ATCGCCAAGA GGAAATTTAT AGAATCAGAA
GCAATTGCAA GAGGCTGCTC CATGCTGGAA GCACAGAGAA ACTCACAAAG CTATTATGAA
AACTTGTGTA TGAGGGCAGT GAACCAAAGT ATAGGAAGAA GCATTAGACA TATCAACGAT
TACTCAATCA TATATCTCGT TGATTGTCGA TATCAGTCGT CTAGGATTCA GAATAAACTC
AGTTCCTGGG TTAGGAAAAG AATAGAAACA AGGAACTATA ACATGGATCA GATCATGGAA
GAGACAAGAG ACTTCTTCAT GTGCAAAACC ATTGCGAGAC TTGCCTGA
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| Protein sequence | METSICSPEN RYSHPYKPYD IQIQLMDAIY DTIDNGYKIG LFESPTGTGK TLSIICSTMT
WLRDYKRENV FQPMAGLDGS DTDDSDSDDE PEWVKKAYRD TIVSRSENKM VDYEMYLEKI
QNEYENNIQT AGSIKSSRPP KKKRSTAKKQ ELHDEDFLPE DYYSDSEVKP NADKLTVLES
EISQLLDKVN GRTDEIEMTN DCPVNIYFSS RTHSQLNQFA HQLALTKFQS SFKGVEERTK
YLPIGSRKQL CINEKVKSFS KNDSNINDVC VDLQKSKEGC QFLPKDYLNS SLTKKLSDLS
LSKIHDIEEI ADLGSNMKVC PYYSVRKGVE MTEIISLPYQ ILLSESTRAI LNLQIEDSIV
VIDEAHNLMD TITSMHSVCI TIGEMNSIIK ALKFYLGRFL KKLNSGNRIH LMKLIKLCQL
VISFIQKSEK CNNIKVGNEI NTSDIYQNST GDMLNIHILE AFLAKSKIAY KIESYMEKVA
ENENEQAKTS SSNPLLYKIV QFLKCLVNPS KEGKFFWDST NGITSIKYML LDPSSVFKDI
VSKARCVILC GGTMEPMSEF KNFLFPYVED KKIKSFSCNH IIPPDNLKVY PVSSQNNVTL
EFSFDNRNNP LMIEALGASI VRICQSVPDG VVVFFPSYKY MNHILSIWKS TDVLTQIESQ
KKLFEEPTSA SQVQTILADY ANTIKEEKKG AILFSVVGGK MSEGINFADE LGRAVVMVGL
PYPNAYSGEI IAKRKFIESE AIARGCSMSE AQRNSQSYYE NLCMRAVNQS IGRSIRHIND
YSIIYLVDCR YQSSRIQNKL SSWVRKRIET RNYNMDQIME ETRDFFMCKT IARLA
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