| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_54281 |
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| Symbol | MSS116 |
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| ID | 4837269 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | + |
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| Start bp | 2325691 |
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| End bp | 2327094 |
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| Gene Length | 1404 bp |
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| Protein Length | 468 aa |
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| Translation table | 12 |
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| GC content | 43% |
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| IMG OID | 640388584 |
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| Product | Mitochondrial RNA helicase of the DEAD box family |
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| Protein accession | XP_001382674 |
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| Protein GI | 150864004 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0633704 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTTGGTGTAG ACGAGCTTGC CAGCAGTGGA AAATTTGATA AGTCTATCAT TCTCGCTTTG
AAAGCAGCCA AGTTCTTGAA CTTGACTCCC GTCCAGCAGA AATCCTTGGT TCCGATCTTA
GAGGAAGACG GTATAGTCGT CAGAGCAAAA ACCGGTACAG GTAAAACTTT GGCATTTGTC
GTTCCCACTC TTCAGACTTC GCTCGAGGTA TTTGATAGAC GTAGAAAGGG AGTTTCGACG
TTGGTTATTG CTCCTACTAG AGACTTAGCT CTCCAGATAG AATCAGAATA CAAGAAGGTT
ATCAGCAAGC TTCCAAGAAG TTTGCAACAA AATGCCGATA TTCTTGTTCT CACTGGTGGT
AAGAGAACCA GCATCAATGT CAGAGACCCT CCTAGTATTG TTGTCGCTAC TCCCGGAAGA
TTGTTGGACC AGTTGTCTAA CCCCAAGAAG GCTGCTGTAT TCAAGAACTT GAAGTACAGA
GTATATGATG AAGCAGACAG ACTTTTGGAC GTAGGATTCG AGCAGACTTT GGGAGATATC
GATGATATTC TTGTACAAAA TGCCCCTGAC GGTTTCAAGT CGATCTTGTT TTCCGCCACT
ATCGATGCTG ATGTAGACAG TTTTGCTCGT CAGCACATCT CTGAGAACTA CAAATACATC
AACTGTGTCA GCGAACATGA ACCGGAAGCA CATGAAAACA TCCACCAGTC GTTGATTACT
TGTAAAGACT CTACTGACGT ATTCAAAACT TCCTTTTCTT ATATTGCTAA TCACTTGCAA
CACAAGGTTC CATTCAAGTG TATGGTTTTC TTACCCACAG TAGCCAGCAC TGAGTGGTTC
TACCAGTCAT TGGTTCGCGG TGTTGACAAT GGAGTATTTG ATGCCAGACC TCTGTCTTTT
GTCAGATTGC ATGGTAAGAG AACACAATCT GCTAGAGATA AAGTAGTGGG CCAGTTCCGC
AGAATGCAAA GCGGTATCAT GGTATGTACT GATGTTGCAG CCAGAGGTTT GGACTTCAAT
GATGTCACAC ACGTGATGCA ACTTACTCCA AGTGTCTCAG TAGCTGATTA CATCCATAAA
GTAGGAAGAA CTGCCAGAGC TGGCAAGGAA GGTAAAGCTA TTCTTTTCCT CACCAAGAAT
GAGATGAAAT ACAGTACAAT CTTGAGAAAG GAAAGAGGTG TCAACTTCGA AGAAGTAATT
GAAGCTGAAG ACATCGAAAA GCCACATGAA GACATTCTTG ACTTAGTTCG CATTAACGAA
GAAGAAATTG AACTGTTCAT ATCGACTTAT CTTTCATTCC AGACGCAAGT TGCTCAAAAG
CACAGATTTG ATTCCCACAG AGCCATTGTC GATATAATGG AGCTTTACCG TACAATCCTT
TCCCAACCAG ATGCCACTAT GCAA
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| Protein sequence | VGVDELASSG KFDKSIILAL KAAKFLNLTP VQQKSLVPIL EEDGIVVRAK TGTGKTLAFV
VPTLQTSLEV FDRRRKGVST LVIAPTRDLA LQIESEYKKV ISKLPRSLQQ NADILVLTGG
KRTSINVRDP PSIVVATPGR LLDQLSNPKK AAVFKNLKYR VYDEADRLLD VGFEQTLGDI
DDILVQNAPD GFKSILFSAT IDADVDSFAR QHISENYKYI NCVSEHEPEA HENIHQSLIT
CKDSTDVFKT SFSYIANHLQ HKVPFKCMVF LPTVASTEWF YQSLVRGVDN GVFDARPSSF
VRLHGKRTQS ARDKVVGQFR RMQSGIMVCT DVAARGLDFN DVTHVMQLTP SVSVADYIHK
VGRTARAGKE GKAILFLTKN EMKYSTILRK ERGVNFEEVI EAEDIEKPHE DILDLVRINE
EEIESFISTY LSFQTQVAQK HRFDSHRAIV DIMELYRTIL SQPDATMQ
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