| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_52543 |
|---|
| Symbol | STP22 |
|---|
| ID | 4851097 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | - |
|---|
| Start bp | 920625 |
|---|
| End bp | 922793 |
|---|
| Gene Length | 2169 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | |
|---|
| GC content | 45% |
|---|
| IMG OID | 640392805 |
|---|
| Product | putative ubiquitin receptor implicated in vacuolar targeting of plasma membrane proteins |
|---|
| Protein accession | XP_001387816 |
|---|
| Protein GI | 126274083 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGTCA CCAAGAAGCT TGCACTCTGG GTGTTCAATG CTCTCCAGCA CAATTATACC
CATAAGGAAC TTGCTTATAA CCACATTCTC GTTTTTCTCC AGAATCAGAG TCAGAACTAC
AACTTCGCTA TAAGAACAAA AGTCTACACC TCATCTGAAA CTGGACAGCC CAGCTTACTT
CTCAATTTGT ACGGATCCAT TAGCCTCGGC GACTCGATTC AAGCTCCAGT GGAAATCTGG
ATTCCCTATA ACTATCCATC AGGCTTTTCA TCTCCTTCTA ATTCATACAA TTCAACAGGA
AATGTCAATG GACAATCAGA TCCTCTATTT GATGCCAATG GCTCGGTTCC CATTGTATAC
ATTATTCCAG ATCATTCCAA AAACTACTAC CTTCGTGCTG GAAACTATGT GGATACCCTG
GGAAGATTCT ACCATCCGTA TCTCGCTAGT TGGTATCAAG AATCATCATC ACATCCTTCA
AACCCAAATG CTCCGATCTC TGCTCGATAC GAATTGCTTC AGTTGATAAA AGTCGTTGCT
GAAGCTCTTC GTGCCGAACC TCCTATATAT TCTATTTATG AAGCTTCTCT GCCTCAAGCC
ATAATGCAAC CCCAAGCTTC AGGATCTCAG CAATCTTCTA ATTATCAATC TGGTCCAAGC
CTTCCACCAC AAATCCCTAT AAGTCATAAT CAAAACCAAC CTATAAAGCC TCAATCTCCT
CTTCAGCAGC AGAGTACTCT TTCTTCTCAA CAATTCAATC CTTCCGTCCA ACAGCTCACT
AGCTCGTACA CCGGGGGCTC AAACACTTCG GGCTACACAT CACCACCACC AAATGGACCT
CCATTACCTC CCAAACCACC TAAGCTACCC AAAACACCAG GGGAAAACCC ATCGCCATCT
CCTTCTACAG GCGGCCATCG TACCACTAGC ACTAGTGAAG CTGCACAGCT TCCATCATTC
GGTAATCCTG TAGAAAAACA AACTCCTGGT TCACGCTATT CTCCACTTGG CCCTTCTCAG
GCTTCTCAGA ACCCAGTTCA TAATCAGCCT CCTAATTTTC AATCTGTTAA TAATGCCTCG
TTCATACCTC AGTTTACAGG CTCAAGTCTG GTGCAATTTG CCCAACAATC CGATTCCAAT
GGTCCTCCAC CATTGCCACA AAAACCATAT AAGCCTTCTG GAGAATCCAG AATGGAGCAG
CGCGCTGTTG TATCAGAATA TCGTAATGCC ACTCCGGTAT TGAAAGATGC TTCTCCGGGG
TATAATTCTG CTACTCCAGT GTACGATTCT GTTCCTGAAA GGTACCGTTC TCCACCCTCC
TTACCTTCTG AACAAAGCTA CCAAAACAAT TACCAAACTG TAGATATTCG TTCACCTTCT
GAATCACCAA GGTATACACC CAAGCCAGCC TACGTCAGAC AGGTTCGCGA ACAGCCCTCG
TATTCGCCTT CGCCTAACTC TCTTGGCCAA ATGCATATAT CTCCCAGTCC AGGAGCCCAA
TATGCTCCAG TTACAACAGC AGCTTCAGTT CCAGTACTGC ACGCTCCCCC TGTAGATCTT
CTTAGTGATG GAACAGATGG ACCTCTGACA GATACGGCCT CGAATGCTGA ACGTAGACAG
GTGTTGGAGC AGTTGTCAGC CAAGTTTAAT TTGTTCTTAA ACGATGCCTA CAACGACAAC
ATCGACAACA GTCTTCCTAA AGTGCGAGAA ACCCACCAGA AAGTTGAGGC CTTGTATAGT
CAGTTGAGCC ACATCTACCA ACAAGCAGTA GAAAATTCCC GAAGTCTCGA CGGTCATATT
GCTTATTTAA CCCAGCAGGT GAACAACATA ACCATACTCA ATCAGGACTT AGTTAAGCTT
GATGAGATCA ACTCTGAGAG TCCCGATAGT GTAACTACTG CTCCCGGAAC CAAGACGCCA
TTGGATAATC TTATTATCCC CGATCTGCCG CTTGTCAGAC AGTTGTATGA GACTGTTCTG
GAGATTAAGG CAGTGAGAGA TACCATTAAT CTAGTCAGTG GCAGTTTCCA TAGCGAAAAG
GAACTCATCA ATGACGCCAG AATGGACTTG TGTGTCAAGA CAGTGAGGAA CCTCGGCAGA
GAGTTGTTCT GGTTGGAGCT TACGAAGCAA GAAATTGCTC ATAACATCAT GGGCTTGTCT
CTGAACTAG
|
|---|
| Protein sequence | MAVTKKLALW VFNALQHNYT HKELAYNHIL VFLQNQSQNY NFAIRTKVYT SSETGQPSLL
LNLYGSISLG DSIQAPVEIW IPYNYPSGFS SPSNSYNSTG NVNGQSDPLF DANGSVPIVY
IIPDHSKNYY LRAGNYVDTL GRFYHPYLAS WYQESSSHPS NPNAPISARY ELLQLIKVVA
EALRAEPPIY SIYEASLPQA IMQPQASGSQ QSSNYQSGPS LPPQIPISHN QNQPIKPQSP
LQQQNASPGY NSATPVYDSV PERYRSPPSL PSEQSYQNNY QTVDIRSPSE SPRYTPKPAY
VRQVREQPSY SPSPNSLGQM HISPILHAPP VDLLSDGTDG PLTDTASNAE RRQVLEQLSA
KFNLFLNDAY NDNIDNSLPK VRETHQKVEA LYSQLSHIYQ QAVENSRSLD GHIAYLTQQV
NNITILNQDL VKLDEINSES PDSVTTAPGT KTPLDNLIIP DLPLVRQLYE TVLEIKAVRD
TINLVSGSFH SEKELINDAR MDLCVKTVRN LGRELFWLEL TKQEIAHNIM GLSLN
|
|---|
| |