Gene PICST_52196 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_52196 
Symbol 
ID4851411 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009068 
Strand
Start bp1750844 
End bp1751455 
Gene Length612 bp 
Protein Length204 aa 
Translation table 
GC content45% 
IMG OID640393119 
Productpredicted protein 
Protein accessionXP_001387974 
Protein GI126274534 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.872388 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0791309 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGAAG AAAAGCCTAG AGGAATTTTG CGGAACAAAT CGGTTTCGGG CCCAGAGAGT 
ACGAGTGCTA TAGAGATAGA TCGTCAGGAA GTTATCAAGA ACACACGTTT AAACGCCGAA
TTGACCCATC AGGCGTCACT GGAAGGTGAT AAAATCAGAG CCGAGCTTGC AAAAAAGCAT
TTGCAAGACG GAAATACCGA ACATTTGCAA TGGGATGAAT TAAATTTGTA CAAGACCGAA
CAGGAAAAGA GCTCTACCAT GAAGATCGAT GAGCCTAAGA CTCCATACGA AGGTGGGTTT
AATCCACAGG GAGAATACTA TCAAAACGAT GACGAATACG GTGATGATGA AAACAATGAT
ATACCAGAGT TTGAGCTCGG AGAAGGCGAG TTTGATGCTG AAAGAGACAA ACACGAAGTG
TTGGATTCGT TGCATGGCGG TCAGGTGATT AGGGACCCAT CGTATGATGA TGTAGAAGAG
GAAGAAGAGG AAGAGCCGGA ATTGACGGCC GAGGAGAGAC ACAAGCGTTT CGAGGAGATG
AGAAAGGCCC ATTATCATAT GAAGGGCAAT GTAATGCACC GTAAGTTGGA GGTAGATGAC
GAGGATGATG AT
 
Protein sequence
MSEEKPRGIL RNKSVSGPES TSAIEIDRQE VIKNTRLNAE LTHQASLEGD KIRAELAKKH 
LQDGNTEHLQ WDELNLYKTE QEKSSTMKID EPKTPYEGGF NPQGEYYQND DEYGDDENND
IPEFELGEGE FDAERDKHEV LDSLHGGQVI RDPSYDDVEE EEEEEPELTA EERHKRFEEM
RKAHYHMKGN VMHRKLEVDD EDDD