| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_51414 |
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| Symbol | HCA4 |
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| ID | 4851348 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 1560007 |
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| End bp | 1562304 |
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| Gene Length | 2298 bp |
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| Protein Length | 765 aa |
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| Translation table | |
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| GC content | 43% |
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| IMG OID | 640393056 |
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| Product | ATP-dependent RNA helicase DBP4 (Helicase CA4) (Helicase UF1) |
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| Protein accession | XP_001387532 |
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| Protein GI | 126274389 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAAAC CTCGTCGAAA CAATAAGAAC AAGAAGGGCC AGTCGAGATC TCAAGCCCGT
GAAAAAGAAG AGGCCGAGTT GCTCAAATTG CAAGAGAGAA TAGACCAATA TGATCCTGCG
GTAGATGAAA AATCTATATC TCAGTTCAGC GACTTGCCCA TTACCCAGGA AACTCTCCGT
GGACTCAACG AGTCCAGTTT CATGTCACTC ACAGATATTC AGAAGAAGAC AATACCTATA
GCTTTGAAGG GAGAAGATCT TATGGGGACA GCCAGAACTG GCTCTGGTAA AACTTTGGCA
TTCTTGATTC CTGTGGTGGA GTCTTTAATA AGAAACAAGA TCACTGAGCA CGATGGTCTT
GCTGCTTTGA TTGTTTCTCC TACCAGAGAG CTTGCGGTCC AGACTTTTGA GGTTTTGACG
AAAATCGGCA AGTACAACAC TTTCTCAGCC GGTTTAGTTA CTGGAGGAAA GGATGTCCAG
TACGAGAAGG AAAGAGTTTC ACGTATGAAT ATTCTTGTAG GTACACCAGG TAGAATTTCT
CAACATCTTA ACGAGGCTGT AGGAATGGAA ACATCCAATT TGCAGGTGTT GGTGTTAGAC
GAAGCTGACA GATGTTTGGA TATGGGATTC AAGAAACAGA TAGATAACAT TGTGGGCCAT
TTACCTCCTA CTAGACAAAC CCTTTTGTTC TCCGCTACAG TTTCTGATAG TGTTAAGGAC
TTAGCCAGAT TATCTTTGAC AAATCCTAAA AGAATCGGAG TATCATCTGA CCAGGATGTC
TCTGCTACAC CTGAATCCTT GGATCAGTAC TATATCAGAA TTCCTTTGGA TGAGAAGCTA
GATGTGCTTT GGTCTTTCAT TAAGTCGCAT TTGAAGAGTA AGATATTGGT GTTTTTTTCT
TCATCAAAGC AGGTTCAATA CGCTTATGAG ACGTTCCGTA CTTTGCAGCC CGGTATCTCT
TTGTTAAAGT TGTATGGCCG ACACAAGCAG ACATCTCGTC TTGAAACCAC CGTAAAATTC
ACACAGGCTC AGTATGCCTG TCTTTTCGCT ACTGACATCG TAGCCAGAGG TTTGGACTTT
CCGGCCATAG ACTGGGTTGT GCAAGTAGAT TGTCCTGAAG ATGCGGTCAC TTATGTCCAT
AGAGTGGGAC GTGCTGCTCG TTTCGGACGC CAAGGTAAGT CTCTCTTGAT GTTGCTACCA
TCAGAAGAAG AAGGTATGTT GAAGCGCTTG GAGAACAACA AGATTGAACC CAAGTTCATG
AACATTAAGC AGAAGAGCAA GAAGAGCATC AGACCACAAT TGCAGTCTTT GTGTTTCAAA
GACCCAATGA TCAAGAATCT CGGTCAGAGG GCTTTTATCT CGTACTACAA ATCGGTGTAT
ATACAGAAAG ATAAGGATGT GTTCAAAGTT GAAGAATTGC CATCTGAAAA GTATGCTGCT
TCGTTGGGTT TGCCAGGAGC TCCTAAAATC AAGATAAAGG GAGGAAGCTC TAGCAAAGAG
AAGAAGAATG CTTCTAGACA ACTTGTAGCA TTGTCCAAGA CTAACGAGGA TGGAGAGTCT
GTGGAGAATG AAGCTTCTAA AGTTAGAACC AAGTACGACC GTATGTTTGA AAGAAAGAAC
CAGAACGTTT TGTCTGAACA CTACTTGAAG TTAAACGGTA GCCAGACTAA GGAAGATGAA
GACGAAGAAG AAGAAGATGA CTTCATGTCT GTGAAAAGAA AGGACCACGA GTTAACAGAG
GTAGAATTAC CTGACTTGAC TATTCCAGTT TCGAAGAGAC AAGCCAAGAA GGCTCTTTCC
AAGAAGTTGT CTATTTCTAC TAAAGGCAAC CCTACGAAGT TGAAGTTTGA TGATGAAGGA
GTTGCGCATG CCATTTATGA ATTGGAAGAC GAAGAAGACT TCATCAAGCG GGGCGATGCC
AAAGAGCAGA AGAAGGCATT TGTTTCAAGG GAAACTGAAG TAATGAACGA AGCCGACGAG
GAAGACAAGA TAATGGCTAA GGAAAAGAGA CAAGAAAAGA AGAGGAAAAG AAAGGAAGTG
GAAAAAAGAA TGAGAGATGA GGAATTACAA CTGGGCGACG ACGAAGAAAC CGTCTACACC
CTTGGCGGAG ATGTAGACTT AGAAAGAGAC ATGGAGTACT CTACTGATGA GGAAGAACAG
CCACAGAATA AGAAGCCTAA GTGGTTTGAA AATGACAAGC ACAACAGGAA GAATCCAGTT
AACCATATCG TGGAAATCGA CGAGCCAGAA ACTTTGGAAG ATTTGGAATC TTTGACGGCC
AGATTGTTAC AGCATTAA
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| Protein sequence | MAKPRRNNKN KKGQSRSQAR EKEEAELLKL QERIDQYDPA VDEKSISQFS DLPITQETLR
GLNESSFMSL TDIQKKTIPI ALKGEDLMGT ARTGSGKTLA FLIPVVESLI RNKITEHDGL
AALIVSPTRE LAVQTFEVLT KIGKYNTFSA GLVTGGKDVQ YEKERVSRMN ILVGTPGRIS
QHLNEAVGME TSNLQVLVLD EADRCLDMGF KKQIDNIVGH LPPTRQTLLF SATVSDSVKD
LARLSLTNPK RIGVSSDQDV SATPESLDQY YIRIPLDEKL DVLWSFIKSH LKSKILVFFS
SSKQVQYAYE TFRTLQPGIS LLKLYGRHKQ TSRLETTVKF TQAQYACLFA TDIVARGLDF
PAIDWVVQVD CPEDAVTYVH RVGRAARFGR QGKSLLMLLP SEEEGMLKRL ENNKIEPKFM
NIKQKSKKSI RPQLQSLCFK DPMIKNLGQR AFISYYKSVY IQKDKDVFKV EELPSEKYAA
SLGLPGAPKI KIKGGSSSKE KKNASRQLVA LSKTNEDGES VENEASKVRT KYDRMFERKN
QNVLSEHYLK LNGSQTKEDE DEEEEDDFMS VKRKDHELTE VELPDLTIPV SKRQAKKALS
KKLSISTKGN PTKLKFDDEG VAHAIYELED EEDFIKRGDA KEQKKAFVSR ETEVMNEADE
EDKIMAKEKR QEKKRKRKEV EKRMRDEELQ LGDDEETVYT LGGDVDLERD MEYSTDEEEQ
PQNKKPKWFE NDKHNRKNPV NHIVEIDEPE TLEDLESLTA RLLQH
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