| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_51237 |
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| Symbol | HTD1 |
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| ID | 4851201 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | - |
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| Start bp | 1183184 |
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| End bp | 1184074 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | |
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| GC content | 45% |
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| IMG OID | 640392909 |
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| Product | hemolysin III domain membrane protein |
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| Protein accession | XP_001387872 |
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| Protein GI | 126274187 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
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| TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.915536 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0649475 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | AATAGGCGTC TTTACTTCTA CCATGAGCTC GATGAATGGC AACAAGATAA CCACTTCATT
CGCTCAGGTT ACGTCAAGGA AACATCATCA TACCGCGAGT GTGTTCAGTC ACTCACGTAT
TTTCACAACG AAACTGTCAA TATCTACTCG CATCTTATTC CTTCTTCGCT AGTGTTCTGG
GGGGTTCTTA TATATGTAAA CTTTTACCTA AAAATCTATG ACAACTACCT TGGGGTATGG
GAGAAGGCAA ACTTCCTTCA GTTTGCCGGT GCCTGCTGGT TCTGTTTGTT TATGTCGTCC
ACTTTTCATT GTATCAAGTC ACATTCCCAT AAGATTAGTC GGTTTGGTAA CCAGCTTGAC
TACTTCGGCA TTGTAATTCT CATCACCTGT TCGTTGAACT CGATCGTGAT GTTTGCTTTC
TACGACCATC CATACTACCG TGATGCACTT GTGGCGATGT TTGTATTGTT GGGAACGATC
TGTACCATCA TGACTCTTCA TCCCAAATTC TCAACCTCCG AGTATCGTCC CTTACGTTCA
ACTATGTTCA TCCTTTTCGG TTTATCGGGG GTTACTCCTG TTCTTCTTGC TGGGTATACG
TTCGGCTGGA AAGCCACCAC TGAAAGAGTC AACGTTCTCT GGCTAGTACT CGAAGGATTG
TTCTACATAG GTGGTGCCGT TCTATATGCA CTTAGAGTGC CTGAGCGATT CACACATACC
GAGGAACACG AAACTTTTCA CCTTGTGCTG GGTGAACCAC TCCCAGGAAG ATTCGATCTC
ATTGGCCATT CCCATCAGAT ATTCCATATC ATGGTGGTCA TTGCAGCCTT CTGTCACTGG
CTTGCTCTTG TGGGCTGCTA CCATTATCTA CACCAACACA TCTTAGAGTG A
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| Protein sequence | NRRLYFYHEL DEWQQDNHFI RSGYVKETSS YRECVQSLTY FHNETVNIYS HLIPSSLVFW
GVLIYVNFYL KIYDNYLGVW EKANFLQFAG ACWFCLFMSS TFHCIKSHSH KISRFGNQLD
YFGIVILITC SLNSIVMFAF YDHPYYRDAL VAMFVLLGTI CTIMTLHPKF STSEYRPLRS
TMFILFGLSG VTPVLLAGYT FGWKATTERV NVLWLVLEGL FYIGGAVLYA LRVPERFTHT
EEHETFHLVL GEPLPGRFDL IGHSHQIFHI MVVIAAFCHW LALVGCYHYL HQHILE
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