| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_50774 |
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| Symbol | TRM1 |
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| ID | 4840906 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009048 |
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| Strand | + |
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| Start bp | 665192 |
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| End bp | 666820 |
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| Gene Length | 1629 bp |
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| Protein Length | 542 aa |
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| Translation table | 12 |
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| GC content | 39% |
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| IMG OID | 640392221 |
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| Product | RNA methyltransferase tRNA(m5U54)methyltransferase |
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| Protein accession | XP_001386532 |
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| Protein GI | 150866809 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.2179 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAACAG CTAAAAATGA ACAGTACCAA GGACCAGAAA GAAGAGAACG TTCAGTATTA
AAGAAGCTCA AGAAAGTTAA CAAGAAGAAG AAAAGAGATA CCGACGACCA CACGAGCAGA
GCCAATATCC TCTTTCTTGA ACTTGAAGAG GCCTTGTCTA CCTTTAATTC CGTAAAAAAC
ACAAACGTTT TGATCAATGA CATACAGAAT CCAACTGAGT TGATGGGAAA CTTTATGTTC
ACCAGGGACC GTCCGACGAT CATTGCGGAT AGTGTGGATA TCCTATATCA AACATCGGAA
GGTGACGGCA TTGGGTTTGT CCCCAAATCC ATGTATGCAT CTCCATTTGT AGAGGAAGGG
GATGACATCT TTAACAAGTT CACGGCTGTA GTAGTTCCGA AGACTATTGT TGGAGATAAG
GTGAAAATAA AGCTAAATAT GCATCACCAG TTCTATTCAG AGGCAGTGCT TTTGCAAGTC
CTAAACTCGA ATTCTCGTAG CACTCCTAGA AAGGATACCT TAGTTGTGTG TCAGAAGTTT
GAAGAGTGTT CTGGATGTCA GTTCCAGATG CTTAGCTACG ATAAACAGCT CCAGCTAAAA
AGAGATACTA TTGTAAAGGC TTATAGATTC TTTTATCCAG AATTGTTGGG AGAACTTGAC
CAATCAGAGT TTGGAAAAGT CATAGGTTGT GAAAATCAAT ATGCATACAG AACAAAGCTT
ACTCCACATT ATAAAGTCCC AAGGGTAATA AAGAACGAGA CTTTGTCTAT AGGGTTGAAT
CACGTTAACC CAACGATGCA AGTTGTGGAT TTGGAGAGTT GTGCAATTGC AACTCCTTCA
ATTAACAGAG CACTTACAAT TACTAGAAAA AAGATCAAAG AAGAGGTGAA GAACGAACCT
TTAGAAGCAC AAGGAAGACA AAGAACTATT CTTTTGCGAG ACGGACTCCG AATGAATAAA
GAAACAGGCG AACATACAAG AGCTTGTTAC GGGGAAAGCT CCAAAGTAAT GACAGAAAAA
GTAGAAGACT TTGTCTTCCA ATTTGATCCT TCAAGCTTCT TTCAGAACAA CAATTCCATT
TTGATACCAG TACTTGAATA TATCAAATAC CACATAGGAT TGGGTGCAAA ACTGTACAAA
TACTTAGTCG ATACCTACTG CGGTGTGGGA TTCTTTGGTA TTTCCTTGTC TAAGCTGATT
CCCAAAGAAG GAAAGGTGTT TGGAATAGAA CTCAGTGAAA GATCTATTAA TTTTGCTACA
CATAATGCCA TGCTCAATGG TCTTGAAGTA CCAAAACGTA TGCAGTTTAT CTCTGGTTCG
GCTGATAGTA TGTTCAAGAA TGAGGAATTT TTGAACTCAG GAATTAAGGG CAAAGAGTCG
ATAGTGATCA TGGATCCTTC AAGAAAGGGT TCCACTGAGC TGTTTATGAG ACAATTATTG
GAATTCAAAC CAAAGTTGAT AATCTATGTC AGCTGTAATG TATTCACTCA AGCTCGTGAT
TTATCGTTAT TCAATAAACT TCAGGAGGAG GGCTCTATAT CATACAGAGT TCGTGATGTT
GTGGGATTTG ACTTCTTTCC ACAAACAAAA CACGTTGAAA CAGTTGCGGT TTTAGAATTG
TTAGATTAA
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| Protein sequence | MPTAKNEQYQ GPERRERSVL KKLKKVNKKK KRDTDDHTSR ANILFLELEE ALSTFNSVKN
TNVLINDIQN PTELMGNFMF TRDRPTIIAD SVDILYQTSE GDGIGFVPKS MYASPFVEEG
DDIFNKFTAV VVPKTIVGDK VKIKLNMHHQ FYSEAVLLQV LNSNSRSTPR KDTLVVCQKF
EECSGCQFQM LSYDKQLQLK RDTIVKAYRF FYPELLGELD QSEFGKVIGC ENQYAYRTKL
TPHYKVPRVI KNETLSIGLN HVNPTMQVVD LESCAIATPS INRALTITRK KIKEEVKNEP
LEAQGRQRTI LLRDGLRMNK ETGEHTRACY GESSKVMTEK VEDFVFQFDP SSFFQNNNSI
LIPVLEYIKY HIGLGAKSYK YLVDTYCGVG FFGISLSKSI PKEGKVFGIE LSERSINFAT
HNAMLNGLEV PKRMQFISGS ADSMFKNEEF LNSGIKGKES IVIMDPSRKG STESFMRQLL
EFKPKLIIYV SCNVFTQARD LSLFNKLQEE GSISYRVRDV VGFDFFPQTK HVETVAVLEL
LD
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