Gene PICST_50268 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_50268 
Symbol 
ID4841163 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009048 
Strand
Start bp644242 
End bp645396 
Gene Length1155 bp 
Protein Length385 aa 
Translation table12 
GC content40% 
IMG OID640392478 
Productpredicted protein 
Protein accessionXP_001386528 
Protein GI150866806 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.891923 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.335478 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACACAA TAATAAACCA GGAATGGTCG AGGATCTCGA CAGAATTGGT CCAGAACCCA 
GATGATTTGA ATCTTTGGCA ACTGCTAATC AAGGCAGCCG AGTCTAATAC TAAACGAGGC
ATAACCAAGT CATCTGGCTT CGAAGAAATC GATGTGCTAA GAGTCTCGTA CCAAAAGTTG
CTCCAAAAGT ATCCCTTATT GTATAACTAC TGGATAAAGT TCGCCGAGTG GGAATTTCAC
CTTGGAGATA CTGATAGAGC CAACCAAGTG TATCAGTCCA GTTTAAAACA TCTTTCCTAC
AGCTGCGAGA TTTGGACCAG CTACTTGAAT TTCAAGATCA ACACCTCTAA CGGTAACTTG
GACGAAGTCT TGGGGTTGTT TGAACTGGCC AGAAGAAAAA TCGGCTACCA TTTCCATGCA
TACGAGTTCT ACAAGTTGTA CCTTTCATTC CTTGAGAACT ACCAAACTGA AACAGAGAAC
TTCAAGTTGA AGTACTATGT TTTGCTTAGA ATCATAGTGG AAATACCGTT ATACCACTAC
GAGTACTTCT ACAAGAAATT GTTTGATACT TTTGCAGAGA TTGGCAACGA CGAAAAAAGA
GCTAACGAAC TTGTGCCGTT GGTGGTGCCG GAGAAGGAAT TGAAAAATTA CAAAACATCC
GAAAACAAGC AGTTAGCATT ACATTTGAAA AAGACATTTG TTGATGCCTA TTTAACCACA
CAATTCAAAG TATATGAATT GTTCAACTTT GAAAAACATA TCACTAGGCA GTACTACGAC
ACAAGCAGCA TTTCCTCCCA GCAACTAGAG AATTGGGACA TGTACCTTGA CTTTCTTGAG
TTGAGAGAAT ATCCCAATGA TTATATCATC TTCACATACG AAAGATGTTT GATCCCGACA
GCTTCGTATG CCAGATTCTG GACTAAATAC AGCGACTACT ACATCAACCA AGGAAACCAC
TTGAAAGCTG CTGAAGTCCT CGTCAGAGGA TACAATTATA GTGGACAGCA TAGCTTATTA
TTGAAACTTG TCGATTTGCA AATATATCTT CACAATTTCA CCAAGGCTAG AGACATGATA
CTTGCATTTA TCAAGACGAA CGCATCAGTT CCACTTCCTA TCTACGAGAA GTTGATTAAC
ATAGAACGGT TCTTA
 
Protein sequence
MDTIINQEWS RISTELVQNP DDLNLWQSLI KAAESNTKRG ITKSSGFEEI DVLRVSYQKL 
LQKYPLLYNY WIKFAEWEFH LGDTDRANQV YQSSLKHLSY SCEIWTSYLN FKINTSNGNL
DEVLGLFESA RRKIGYHFHA YEFYKLYLSF LENYQTETEN FKLKYYVLLR IIVEIPLYHY
EYFYKKLFDT FAEIGNDEKR ANELVPLVVP EKELKNYKTS ENKQLALHLK KTFVDAYLTT
QFKVYELFNF EKHITRQYYD TSSISSQQLE NWDMYLDFLE LREYPNDYII FTYERCLIPT
ASYARFWTKY SDYYINQGNH LKAAEVLVRG YNYSGQHSLL LKLVDLQIYL HNFTKARDMI
LAFIKTNASV PLPIYEKLIN IERFL