| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_48772 |
|---|
| Symbol | VRG4 |
|---|
| ID | 4840002 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009046 |
|---|
| Strand | - |
|---|
| Start bp | 238705 |
|---|
| End bp | 239688 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640391317 |
|---|
| Product | GDP-mannose transporter into the lumen of the Golgi |
|---|
| Protein accession | XP_001385736 |
|---|
| Protein GI | 126138426 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5070] Nucleotide-sugar transporter |
|---|
| TIGRFAM ID | [TIGR00803] UDP-galactose transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.09104 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0552674 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATCCT CATTAGCTGC TATAGCCAAC TCCGGCCCCA TCTCCATCTT CTCATACTGT
GTCTCGTCCA TCTTGATGAC GGTCACCAAC AAGTATGTGT TGTCTGGTTT CTCGTTCAAC
ATGAACTTCC TCTTGTTGGC TGTCCAGTCC ATCGTGTGTA TTGTCACCAT CGGCTCGTTG
AAGTCGTTTG GTGTCATCAC CTACAGACAG TTCAACAAGG AGGAAGCAAG AAAGTGGTCC
CCTATTGCTG TCTTGTTGGT CATCATGATC TACACCTCTT CCAAGGCTTT GCAATATTTG
TCGATCCCAG TGTACACCAT TTTCAAGAAC TTGACCATCA TTTTGATTGC TTACGGTGAA
GTCTTGTGGT TCGGTGGTAA GGTCACCACC ATGGCATTGT CATCATTTCT CTTGATGGTG
TTCTCGTCCG TTGTCGCTTG GTACGGTGAT GAGGCCGTTT CCGGTTCTGG TAACGAATCC
TTCATTGCTT TGTATTTGGG TTACTTCTGG ATGGCCACCA ACTGTTTTGC TTCCGCTGCC
TTCGTGTTGA TCATGAGAAA GAGAATAAAG TTGACCAACT TCAAGGACTT CGATACCATG
TACTACAACA ACTTGTTGTC CATTCCTATC TTGCTTGCTT CTTCTATTAT CTTTGAAGAC
TGGTCTGCTG AAAACTTGGC TGTGAACTTT CCAAGTGACA ACAGAACAGC CACCATCGCT
GCCATGGTAT TGTCCGGTGC TTCTTCCGTC GGTATCTCGT ACTGTTCTGC TTGGTGTGTA
AGAGTTACAT CTTCCACTAC TTACTCTATG GTCGGTGCCT TGAACAAGTT GCCTATTGCT
CTTTCTGGAT TGGTATTCTT TCCAGCAGCA GTGAACTTCT GGTCCGTTGC TTCCATCTTC
GTTGGTTTTG CTGCTGGTTT GGTTTATGCT GTTGCCAAGC AAAGACAACA AAAGGAAAAC
GTCTCCTTGC CATCGTCGAA GTAA
|
|---|
| Protein sequence | MESSLAAIAN SGPISIFSYC VSSILMTVTN KYVLSGFSFN MNFLLLAVQS IVCIVTIGSL
KSFGVITYRQ FNKEEARKWS PIAVLLVIMI YTSSKALQYL SIPVYTIFKN LTIILIAYGE
VLWFGGKVTT MALSSFLLMV FSSVVAWYGD EAVSGSGNES FIALYLGYFW MATNCFASAA
FVLIMRKRIK LTNFKDFDTM YYNNLLSIPI LLASSIIFED WSAENLAVNF PSDNRTATIA
AMVLSGASSV GISYCSAWCV RVTSSTTYSM VGALNKLPIA LSGLVFFPAA VNFWSVASIF
VGFAAGLVYA VAKQRQQKEN VSLPSSK
|
|---|
| |