| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_48268 |
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| Symbol | AMD4 |
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| ID | 4840414 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009046 |
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| Strand | + |
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| Start bp | 1320486 |
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| End bp | 1322204 |
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| Gene Length | 1719 bp |
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| Protein Length | 572 aa |
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| Translation table | 12 |
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| GC content | 46% |
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| IMG OID | 640391729 |
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| Product | amidase |
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| Protein accession | XP_001385605 |
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| Protein GI | 150866116 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCGCCT ACACAGATTT CTTAACTACC GATTCACTCT CGCAGTACGA AGACAGCGAC
AAGTACACCA AGGAATGGGT ACCTCTCATC GAGAAGTACA GACTGGATTT GGCTGCCGCT
ACTCCCGAAG AATTGAAGGT CAAATTGCCC AAGGATTTTG ACGCGTTGGT TGAAGAACAG
TTCAATCCGC TCGAGTATTT GTACAGTGAG AAGTTGTTAA CTCCTGAGGA GTTTGCACTT
ACTGACTCAT CAGCTTCGTC TCTTGCCTCG AGAATTGCAG CTGGTGAATT GACTGCTGTG
CAAGTTTTCA AGGCTTTCTC CAAGAGAGCC GTGATTGCCC ATCAGTTCAC CAACTGTGCC
ATGGACTTCT TCATTGATGA AGGCTTGAAG AGAGCTGAGT ACTTGGACGA GTACTTCAAG
AAGAACGGCA AGACCGTTGG TCCTTTGCAC GGTGTACCTG TTTCGTTGAA AGAACACATG
AACTACAAGA ACAGAATCAC CCACGGAGGA TATGTCTCGT TGTTGAAAAA TGTTCCTAAG
ACTTCATCCG CTACTGTCCA GATTTTGGAA GACTTGGGGG CTGTCTACTA CATCAGAACA
ACTCAGCCGC AGACGTTGAT GCATTTGGAC TCTGCTAACA ACATCTCTGG TTTAACCAGA
AACCCTTACA ACATGTCGTT GTCTTCTGGA GGTTCATCTT CCGGTGAAGG TGCTGTAGTT
GCCTTTGGAG GCTCTGCCCT TGGTGTAGGT TCCGACATCG GTGGCTCCAT CAGAGGACCT
GCCGCCTTCT CCGGATGTAT TGGTTTGAGA CCAACATCCA AGAGAGTCTC GTTGAACGGA
GGAGTCAGCT CTGGTGCTGG TCAAGAATCT GTTCCTGCTG TGATTGGCCC ATTTGCTCGT
ACTGTAGAGG ACATAGACTT GTGGATGAAG TCGTACGTCA ATGAGGGAAA GCCTTGGTTA
GTAGATCCAA ACAGTTTGCC TATGCCTTGG AGGCCTGTAG AGGCTCCAGA CGCCAAGAGC
TTGACAATCG CCGTAATGTA CGATGATGGA AACGTGAGAC CAAGTCCAGC TGTGACCAGA
GGCTTGAACT TCACTGTAGA AAAGTTGAAG TCTGCTGGTG TTAATGTTGT AGAGTTCAAG
CCAATTAGAA CAAAAGAAGC ATATGAAACT GTCCATAAGA TGTACAACTG TGATGGAAAC
TACATGCAGA GAAAGTTGTT GGCTGCTTCT GGTGAACCAT TGGTGAAGTT GACGAAATGG
AGTTTGAACT ACGGTAACGG TGAAAAGAAC TATACAGTCA AGGAAAACCG TGAGTTGAAC
GTCATCAGAG ACTCCTTGAA ACAAGATTAT AACGATTTCT TGTTGCAAAA CAAAATCGAC
TTCATCTTGA GTCCAACTTA CAACAACGCT GCTCCCAGAT CTGAAGAGGT ATTCAACTGG
TCCTACACCT CGTTGTTCAA CATTTTGGAT TTCCCTACGT TAGTGTTCCA GACAGGCTTG
AAGCAGGACC CCAAGATCGA CGTGTGGCCA GCAGAAGCTG CTAACTACAC GTACAGAAGC
GAATTGGAAA AATTGGAAAA CGAAAACTAC ATTCCAGAAA ACTTTATCAA TGCTCCTATC
GGATTACAGT TGTCAGGTAG AAGATACTTT GACGAAGAAG TTGTGGCAGC CGGTAAGACC
ATTGTGCAGA TCTTGGGTGC AGACTTACTC AAGCATTAA
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| Protein sequence | MVAYTDFLTT DSLSQYEDSD KYTKEWVPLI EKYRSDLAAA TPEELKVKLP KDFDALVEEQ
FNPLEYLYSE KLLTPEEFAL TDSSASSLAS RIAAGELTAV QVFKAFSKRA VIAHQFTNCA
MDFFIDEGLK RAEYLDEYFK KNGKTVGPLH GVPVSLKEHM NYKNRITHGG YVSLLKNVPK
TSSATVQILE DLGAVYYIRT TQPQTLMHLD SANNISGLTR NPYNMSLSSG GSSSGEGAVV
AFGGSALGVG SDIGGSIRGP AAFSGCIGLR PTSKRVSLNG GVSSGAGQES VPAVIGPFAR
TVEDIDLWMK SYVNEGKPWL VDPNSLPMPW RPVEAPDAKS LTIAVMYDDG NVRPSPAVTR
GLNFTVEKLK SAGVNVVEFK PIRTKEAYET VHKMYNCDGN YMQRKLLAAS GEPLVKLTKW
SLNYGNGEKN YTVKENRELN VIRDSLKQDY NDFLLQNKID FILSPTYNNA APRSEEVFNW
SYTSLFNILD FPTLVFQTGL KQDPKIDVWP AEAANYTYRS ELEKLENENY IPENFINAPI
GLQLSGRRYF DEEVVAAGKT IVQILGADLL KH
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