Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_47305 |
Symbol | PRP24 |
ID | 4839134 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009045 |
Strand | + |
Start bp | 524284 |
End bp | 526863 |
Gene Length | 2580 bp |
Protein Length | 837 aa |
Translation table | 12 |
GC content | 37% |
IMG OID | 640390449 |
Product | U4/U6 snRNA-associated splicing factor |
Protein accession | XP_001384763 |
Protein GI | 150865513 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0758883 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.157057 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | AAAGCATTGC TTAACTTTCA TGAGGATCGA ACTTTCGATG AACCATCATT CAGGAATTGG AAAGAGCGAA TAGATCATTT TCGTAGTAAG GAACTGGATC CGGAGTTGGT GACAGATTTA TTACAGGAAG CTATGGCTGA TTTAAAATTC CATTACTACG ATATTGACAA GTTTATAGAT TACACAATCG ACTACTTTGC AATGGCTGGA GCTACAGGAT CTGAAATAAT GAACCTTCGT CTTCAACTTC TAGAAATTCC ACATGCTGGA TTGCAGGATT CTTTTTCTAA AATGTCGGCT ACTGTTTCGA AATACTCAAC CCAGTATGAA GACGATATGT CAGTAGCTCA GAAAACCTAT TCAGCAACCT TGAAGAAACA AAAACATATT GAAATCTTCG AATTAGCCTT ATTAAGAGAA CCAGATAACA TGTCTCTATG GACAGAATAT GTGAAAAACT ACGCAAAGTA CATGGCTAGG GAAGATGATG ACGCTCTTTT GTCGATATTT CGTCGAGCAC CCAAGTCTGA TGAGCTGTGG CTTCCCTTCT GTTTGTTGTG TATATATACT GTCTATGAAC AGCAGTTCAG AGGTAAAGTT CTCGACGATA GAGTCTTGCT CCATATAACA GGCGAGCTTA CTAGATTGTT TCCCTACCAT CCTTCGGCTT ACACAGAAGC ATTGAAGCTT CCAGTCGACC GGATAAAAAT GATAATTACC ATTAAAAATT TGGATTTAAT TCATAAGTCT GACTATAATG AATGGAAGAA GGTTGCGTTG GCTATTTTGA CATATTTATC ATCTGGAATT TCATGGAATG ATCCAGAAAT AAAGAAGCTA CAAGAGAAAC TAGATGTAGA TCTAGTAGAC AAGTACAAGG ATGAACCCAA GACTTTTCAA AACATTTCCT TTGCTCAGAA GCTTCAAAAC TTCGCAATCG AGTTTGCTGA ATTTGCTATA GTTGAAAACA ATGATATTTT TCATTCTGTT GAAAAGCTTT CGATTACACT TTTGGAACGA CTTGGAGATC AAGAGAGTGT TCATAAGCTT GCTAAGCAGT TGGTGGAACG TTTTTCTGAT CAATGTGAGG TATGGCTCTT TCTCATAAAT TTTTACATCA GTGTAAATGA AAACAAAGAT TTTATAACTT CTTTGTTTGA GAAGGGAGTC TCCTTTGCAA AATCTCTTGA TTGGCCAGAA AGGTTGATTG AAGAGTGGAT ACACTTCGAA ACAGTTTATG GTACACCAAT ATCATCAAAG AAAGCTGTCT TGTTTTGTAA TAATACTTTA CAGGATTTGG CATTGGAAAT TCAAAATGAA AGCAACGAGG AGGTTGATGA TAAGCAGGCA GTTCTATCAG AAGATGAAGA TAGTGAAGAA GGAGATAAAA AACGTAGAAA ATTGAATAAA AACGATTCAT CTGCTATAGT ACCTCCTAGA TCGAGAGAGA ATTTGATGGT TAAAGTGGAA AATTTGACTT CCGATGTCAC CAGGAATGAT ATAACTCGTT TCTTTAGTGA CTGTGGAAGT ATTAGAGAAT TGTCTATTGT GGAAAATAGT GCGACAATTG AATTCCATGA AGAACGAGAA GTTTTGGCTG CAATTACTAA GGATAAGAAG AAAATTTCTG GGAAGGAGAT CTCTGTGAAA CGAATAGTGA ATTGTATTCT TTTTGTTAAC AATTACCCAC CCAGTATGGA CCAGGGCTGC ATAAGGTTGA TGTTCGAACA GATAGGTAAG TTGGCCAGTA TCAGGTTTCC TTCTCAGCGT TCGAACCATA CTAGACGGTT CTGCTATGTA GAATATGAAA ACGCCAATTC TGCTCTTCAA GCTGTCAAGA TTTATAATGG AAAGGTATTG GTAGATAATG TTCTCCATCA GGATTTTGCT CTTCAGGTTG CTATATCTGA TTCTGAAGCC AAGTCAGATA GAGAAACCAA GATGGAAAGC CAGATTAGAG TGAAGAACAT TGACTACATG CTTGATATTG AAGCCATCAA AGGCATGTTT GTTGAATGTG GAACTGTTAC TCTGGTAGTA ATTCCTAAGT TTCAGCGAAA TAATTTTAAT CAAAAGAACA ATGGTTTGGC ATACGTTACT TTTGAGAGTA ATCACGAAGC ACAAAAGGCT GTACAAATGG ATGGAAAGAT AATTGGAGGT AGACCAATTT CGGTTGCTTT AAGCTCGCGT TCACAGAAAT ACTCACAGTC ACACAAGCAT GATAATGGCT ATTCAGCATC CAAATATTCA CAATTTGAAG ATGTAAGAAC TGTGGGTGTT ACTAATGTTG ATAACACATT GACTGCAGAG CAAGTTAAAC TATTTTTCTC TACCAATGGA GGTGTTGTTA GTAAAGTTGA GATCTTTCCT GAACATGCTG TGGCCATGGT GGAGTTTGAA AAGGCATCAG ATGCTGGAAA TGTGACTATG AGTCTTAGAA CCAAGCAATT GGGAAACAGG GAGATTGTGT TGACGTCAAT GGCAGAAGTT GTTAGTATTA TTAAGGGAAA GAAGGAGCTG CATCAACAAC CTGTTCCAAA GATGATGGTT CCAGCATCAA TACGTCGCAA GAGAAAGTAA
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Protein sequence | KALLNFHEDR TFDEPSFRNW KERIDHFRSK ESDPELVTDL LQEAMADLKF HYYDIDKFID YTIDYFAMAG ATGSEIMNLR LQLLEIPHAG LQDSFSKMSA TVSKYSTQYE DDMSVAQKTY SATLKKQKHI EIFELALLRE PDNMSLWTEY VKNYAKYMAR EDDDALLSIF RRAPKSDESW LPFCLLCIYT VYEQQFRGKV LDDRVLLHIT GELTRLFPYH PSAYTEALKL PVDRIKMIIT IKNLDLIHKS DYNEWKKVAL AILTYLSSGI SWNDPEIKKL QEKLDLQNFA IEFAEFAIVE NNDIFHSVEK LSITLLERLG DQESVHKLAK QLVERFSDQC EVWLFLINFY ISVNENKDFI TSLFEKGVSF AKSLDWPERL IEEWIHFETV YGTPISSKKA VLFCNNTLQD LALEIQNESN EEVDDKQAVL SEDEDSEEGD KKRRKLNKND SSAIVPPRSR ENLMVKVENL TSDVTRNDIT RFFSDCGSIR ELSIVENSAT IEFHEEREVL AAITKDKKKI SGKEISVKRI VNCILFVNNY PPSMDQGCIR LMFEQIGKLA SIRFPSQRSN HTRRFCYVEY ENANSALQAV KIYNGKVLVD NVLHQDFALQ VAISDSEAKS DRETKMESQI RVKNIDYMLD IEAIKGMFVE CGTVTSVVIP KFQRNNFNQK NNGLAYVTFE SNHEAQKAVQ MDGKIIGGRP ISVALSSRSQ KYSQSHKHDN GYSASKYSQF EDVRTVGVTN VDNTLTAEQV KLFFSTNGGV VSKVEIFPEH AVAMVEFEKA SDAGNVTMSL RTKQLGNREI VLTSMAEVVS IIKGKKESHQ QPVPKMMVPA SIRRKRK
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