| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_46989 |
|---|
| Symbol | PRP31 |
|---|
| ID | 4839069 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009045 |
|---|
| Strand | - |
|---|
| Start bp | 1120984 |
|---|
| End bp | 1122681 |
|---|
| Gene Length | 1698 bp |
|---|
| Protein Length | 544 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640390384 |
|---|
| Product | splicing factor |
|---|
| Protein accession | XP_001385225 |
|---|
| Protein GI | 150865843 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1498] Protein implicated in ribosomal biogenesis, Nop56p homolog |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.192868 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGACT ATGAGAAAGA ATTGCTAGCT GACTTCGACA GTGACAGCGA CGTAAGCTTG
GAAGAGGAAC CCTTGGTTGA AAATTCGACC GAAAACGAGG CAAAATCGTT TGAAAACCTC
AATGGGCTCC AGGAAAATGA CTTTATTCAC CAACAGAATG GATTCAATAG CGGTGAAAAT
TCAACCAACA ACCACGAAAA AACATTTTTT ACACAACTAA GCGAGTTGAT TGCCTCCAAT
ACCGTAGCAG GTTCACTTTC GGCGATTCTA AGTGAGCCAG ACATAAGCAG CATTGAAGAT
ATCACTGTCT TCTCGAAGGT ATACCCACTT ATTCCTCAAT TGAAGAAGCA TATAGAGTTG
TATTCCAACG AGGAGACAAC TGATTTTTTG GAACTCCTAT CTTCTATTGA TGATAGTGAA
GACCAATCGG AAGAGTACAA GTTCATTCTT TTGGTAAACG AGCTTCTGGG TATCATTAAT
CAGGAAATTA TAGCCTACCA TCAGCTTCTC AAGACTCAGT ATAAAGTAGT GTTTCCAGAG
CTTGAAACGT TGGTGCTTAA CCCCATAGAT TATGCTCGTA TTATAGCGAT AATCAAACAG
GACTTGAAGA ATATCCGTTC ATATGACGAA CAAATGAAGG CGATAGTGTC CAATGAAAAG
ATTCTTGTCA TTATAATGGC GGCTCTTCAG CAGCTAGGCC AACAATTTGT ACTCAATGAT
AAAGATATGA ACAGCATAAT TGATTGCTGT GTCATTTTGC TTGAATTATA TGAAATATTA
CAGCTTCTAT CGAACTTCAT AACTCAAAAG CTCACTAAGT TTGCACCTAA TGTGAGTGCT
ATTGTCGGTT CTATTACAAC TTCGCAATTG TTAATAGCAA CAGGTTCTTT AAAACTGTTG
GCCATGACTC CTTCGTGCAA CTTGGCGTCC TTAGGAATCA GAGACCTTTC ATCAAAGACG
AAATCCAAAT CTAGAACCGT ACGGCAAACA GGCTATTTAT ATCATTCTGA AGTTGTAAAG
TATCTTCCTG AGGATATAGT TCGTTCGACA ATGCGTATAG TAAGCGGAAA AGTGATTTTG
GCCGCTCGTG TAGATTTGGC AGGCTCTTGT CCTGATGGTT CCATTGGTCA TACGTATTTG
GAAGAGATTA GGAAGAAGAT CGACAAGCTC TTGACTCCTC CTGAACACCA ACCCGACAAG
GCATTGCCTG CTCCAGTAGA TGTGAAATCA AAAAAGAGAG GAGGTAGACG ATTCAGGAAG
ATGAAGGAAA GGTTCCAGAT GTCTGATTTA CGCCGAGCCC AGAACAAGAT GGAATTCGGC
AAGGAAGAAG ATTCTGTGAC AGACAGTTTT GGTGAAGAAA TTGGATTGGG TATGAGCAGA
ACGAATGGAG GCAGTGGAAG AATTGGAGAG ATTAGAGTGA ATACTAATAC TGGAGCCAGA
ATGTCAAAGG GCATGGTTCA CAGATTACAG AAACATGAAC AGAGTGCCAA AATTCAGAGA
ATTGACAAGG GTATATTTGA CCAAGACTTT GACAGCATTC TTTTGGTAAA CCCTAGTAGT
AAAAAAAGCA GCGAGAACAA GCTCAATGGT TCAAGTAGTC TGACAATTGG AAGCAAGTGG
TTTACAGGAA TGAGCAAGAG GAAAAATGAG GACGATGGTG GCAACGACAA GAAGAGACAA
CAGAATAGTG TATTATAG
|
|---|
| Protein sequence | MQDYEKELLA DFDSDSDVSL EEEPLVENST ENEAKSGENS TNNHEKTFFT QLSELIASNT
VAGSLSAILS EPDISSIEDI TVFSKVYPLI PQLKKHIELY SNEETTDFLE LLSSIDDSED
QSEEYKFILL VNELSGIINQ EIIAYHQLLK TQYKVVFPEL ETLVLNPIDY ARIIAIIKQD
LKNIRSYDEQ MKAIVSNEKI LVIIMAALQQ LGQQFVLNDK DMNSIIDCCV ILLELYEILQ
LLSNFITQKL TKFAPNVSAI VGSITTSQLL IATGSLKSLA MTPSCNLASL GIRDLSSKTK
SKSRTVRQTG YLYHSEVVKY LPEDIVRSTM RIVSGKVILA ARVDLAGSCP DGSIGHTYLE
EIRKKIDKLL TPPEHQPDKA LPAPVDVKSK KRGGRRFRKM KERFQMSDLR RAQNKMEFGK
EEDSVTDSFG EEIGLGMSRT NGGSGRIGEI RVNTNTGARM SKGMVHRLQK HEQSAKIQRI
DKGIFDQDFD SILLVNPSSK KSSENKLNGS SSSTIGSKWF TGMSKRKNED DGGNDKKRQQ
NSVL
|
|---|
| |