| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_46600 |
|---|
| Symbol | |
|---|
| ID | 4839425 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009045 |
|---|
| Strand | + |
|---|
| Start bp | 827763 |
|---|
| End bp | 829832 |
|---|
| Gene Length | 2070 bp |
|---|
| Protein Length | 637 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640390740 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001384827 |
|---|
| Protein GI | 150865560 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.438608 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTCCA TTCCGGAAGC CAAAGAGGAG TACCTTGGTT CGTCGGTTAT TGAGCGAACG
GGCCGTTTGC ATTCGTTTGT AGATTTAGGT CCAGCCGACT TGTGTAACAT TTACAAACAT
CTGGTCACTT CGAAGAAGGG ACTGGAGATC GGGACATTTC TCTACTTCAC CGGAATCGAC
ACTTCCAATT CGGCGTCCAT AGCCGCGCAA TTGCAGGGGT TGGCTACGTT AATGTCGTCG
AAGTCTCACT ATTGGTTCGG TGAGAAGAAG CACTGGAAAG TTCCCCAGAT GACGTATTGC
ACTTACAATG CCTTTTCTAA ACTTGATATG CGTGTTACCG TACACATGCC AGGTAAGTTT
GAGTCTTCGG TAGTGAATAA CGACGGCAAG TTGATCCATG ACAAGATCCT GAACGACGAG
TTGGATCGGT TGTGGCTAGA AACTTTCGTA AGTTCTATAG TTAGATCGTT GCTCGATTCC
GACGATGATG AAAACAACAA AGTTGGCGGC CTTGTAGAAA TTCGAAAGGT CAATCCGTTC
AACGACGGTA GCAAGCAAGT GTTGGCAACT TTTTTGGCTG GATTTGAGAA GTTGTTCTAC
GAAGGCCCCA AGCTAGGCTG TGGCGTAGAC ATTCCACTGC CGACCTTGAT CTCCAATTAC
TTGGTAGACG GATTCTTGAA ATGTGTACAG TTGACACAGT CGTATGATTC TGCTTTGGAG
ATTCTCCAGA GACTCGAGCA GAATGAACCC AGTGTGATCT CGTTAATTGC CCAAGTGTTA
TTGCTCAAGG ATGAAGAAAT CCAGGCAGTC ACGACTATGA GCGAAGGTAT AGCCAGAGAT
AGACGTGACG CAGACTTGTT GTTGTTGCAA GCTGAATTCT GTATGAACAA GAAGCGAAAC
GATTTGGCTT TGGATTTAGC TAAGCAGGCA GTGAAATCAG CTCCTTCTGA TTTCAAGTCC
TGGTCAATGT TAGTAAAGGT GTATACCAAG TTAGGCGATT TTGAGAATGC GTTGTTGACG
TTGAACTCGT GTCCTATGAA CTCGCACAAG GAGAAGTACA CCTTGAGAAG AGTAGTACCT
TTAAGAGGTG GCAACGAAGA CTTGCACTTG CCATCTCCTG TGGATGTAAC ATTGGAAGAC
GTATCGTATT TGCTGAGCCA AGATGTTGCC AATGAGCAGA GAAACTTGGA TCCTCAGCTT
GCGAACTTGC CTGCTGCTAA CTTGAAGTCG ACATTTGCTA AAGCATACGA CTTGTTGACT
GACATCGTAG TGAAAACAGG CTGGCAGACG TTGTTGAAGT ACCGTGCGAA GGTATTTGTC
ATGGAAGAAG AGTATCGTAA AGATAGAAAC AACTCCAGCA ATGGCAACGT CAGAAAAAGC
TCTACAGTGT CTACACTCAA TGGTGAATCG TCGTTGAATC CGGAGGCAGC TTCTCCTGAC
AACGATGCTT CTTCTACCAC AGCTATCAAG TCACCCAAAA AGGAAGAAGA AAGCGATACC
ATCTTAGGAG AAGAAGAGGA AGAGTCATTA GAAGACGAGT TCAAGAGGAA GAGATTATGT
GAAAGATGGT TGGACAACTT ATTCATGTTG TTGTATGAGG ACTTACGTGC CTATACAATG
TGGCAGGCAG AGTCACTTCA CTTCCAGGCT CAGCAAATGG AGTATAAAAA GACTACCTTG
GAATGGGAGA TCTTGGGTTC AATCGCATAC AGATTAAAGC ATTTCAAAGA AGGATCTGTA
GCCTTTGCCA ACGCCTTAAG TGGCCGATTC TCAGCCAAAT CTCAAAGAGA AATGTTGAAG
TACTACCAGA TGGAAAGATC GCGAATCATT ACCAATTCTG GTAATTCCGA TCAAAACAAC
TCATACCAGC CAAATTACAC GAAGAAGCTC AACCAGTTGA ACGAAAGAAT ATTGGAAAGT
ACAATTAAGT TGCTTGTCTG GAATCACAGA TGGTACTCTG ATTTCTCGCC TAAGTTAATA
AATTCTTTAG GAGACTTGAT AGCTAAAGAA GGATTGATCA AGATTCAGTC TTTAGTCCAA
GCGTTATATT CGACAAACGT AACTAGTATA
|
|---|
| Protein sequence | MASIPEAKEE YLGSSVIERT GRLHSFVDLG PADLCNIYKH SVTSKKGSEI GTFLYFTGID
TSNSASIAAQ LQGLATLMSS KSHYWFGEKK HWKVPQMTYC TYNAFSKLDM RVTVHMPGKF
ESSVVNNDGK LIHDKISNDE LDRLWLETFV SSIVRSLLDS DDDENNKVGG LVEIRKVNPF
NDGSKQVLAT FLAGFEKLFY EGPKLGCGVD IPSPTLISNY LVDGFLKCVQ LTQSYDSALE
ILQRLEQNEP SVISLIAQVL LLKDEEIQAV TTMSEGIARD RRDADLLLLQ AEFCMNKKRN
DLALDLAKQA VKSAPSDFKS WSMLVKVYTK LGDFENALLT LNSCPMNSHK EKYTLRRVVP
LRGGNEDLHL PSPVDVTLED VSYLSSQDVA NEQRNLDPQL ANLPAANLKS TFAKAYDLLT
DIVVKTGWQT LLKYRAKVFV MEEEYRKDRN NSSNGNVRKS STVKRLCERW LDNLFMLLYE
DLRAYTMWQA ESLHFQAQQM EYKKTTLEWE ILGSIAYRLK HFKEGSVAFA NALSGRFSAK
SQREMLKYYQ MERSRIITNS GNSDQNNSYQ PNYTKKLNQL NERILESTIK LLVWNHRWYS
DFSPKLINSL GDLIAKEGLI KIQSLVQALY STNVTSI
|
|---|
| |