| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_46396 |
|---|
| Symbol | |
|---|
| ID | 4839363 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009045 |
|---|
| Strand | + |
|---|
| Start bp | 595549 |
|---|
| End bp | 597828 |
|---|
| Gene Length | 2280 bp |
|---|
| Protein Length | 731 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640390678 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001384781 |
|---|
| Protein GI | 150865527 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.636062 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.014415 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TCTAGAAATA GCAAGTCGCT CTCTGCAATG GTGGCTGCTA AAAAGTCTAT CAATAACAGT
CATACACCTT CTCCGTTACA ACAGCAAGTA CTTGCAAGAT CTCCATCCAT CAGCAGCAAT
AATTCCAACC ACTCCACGAC AAGTTCTTCT CAGGCGCAAT TTGTAATCCT GTTGGATAAG
ACTCCCCAGA ACTTGACTCC TACGCAGAGA TTACAATTGC GCAAACTGCA ACTTAACAAC
AGCATCTCTA AGTTCAAATC AGACGACACA AATATCAGTT TGCCAGTTAA CCGATCCATA
CATCAATCCA AATCATTGTC TCGCACGGCC AATCGTGCGA ATAATGTCGA TGTCGTTATC
GATGATCAGG ATGAAGAAAT CGACGTTGCA GACGTTCAGT TTCTGATGGC TCTCTTTAAT
GCTCCGCTTT CGCAACAATT TACTTCTATC AGCCACCGTG AAAAGTTTCT CTTTGATAAC
ACCGAAAGAA AGTCGTCTTT GACCAATAGC GATTCAACAA GATCTTCGTC AATTCTCAGT
CAGGATAGTT TTAACGAAAC CAGCTCGTCT GTGTCAGACT ATGAGGATGT CTCGTTTGCA
TTCTACAAGA GTGTCAATAG TTCGTTTTCG AGTCTTGAGT TCAGCTCCAT CTCTAGAGAC
GCTCAGGAAT TGACCCTCTT GTTCAATAAG GATGAGTCCG TTCAGATCGC CGAAGAATCA
GCATGCCGTC AACAGATGTT GAATAGCTTC AGAAAAGTCC CCAGTCCACA AACTTCAACT
GCCTCACCCA ATCCCCTTCA ATCTTATTCC TCTTCCAGAC CTCTTGCTAG GAATCATTCC
GTTTCCCGGC CTCAAGCACC AAGGCAGAAC CTACCACCAC TTCCTCCTTC TCAGTCACAG
GTAGGGCGTT CCTCTTCGGT TTCCAAGTAC TACACTTTTA CCAGACCTAC ATGGTTACCT
CCAAAATCAT CATACGACAA ACGTAAGCAT CAAAAAGAAT CTGAAGATAT TCTTCTAAAT
GCAATGAAGA TAGAAGCAGA GCAACTGCGC AAGAAATTGA TTCAATTACA AACAATCAAG
AAGCAAAAAC TCAAGGACTT GAAGGTTTGG GAAGCATTGA CAGCTCTCCC AACAATGGAA
GATTACGAGG AAAAATTATC ATCAGTGAAA AGTTTCGATG GTATGTATTG GAGAGGAATC
CCAGAAAGTG TTAGAGGAAA GGTTTGGTGG AGAAACTTGA ACTCCAAATT CAAATTCTAT
CCCAACGGAA AAAAGGATGC TCACATGAAC AAGTTCAATG TCCAATTTTG CGAATACTAC
TTCCAAATGT ACGACAGTGT TGTATTACCA AATGTGAAGC AATTGGAAAA GCTTGCACGC
GAACACAACC AGATGAAGGT AATCGTGGAT CAGTATGAAG GTCATGGTGT AAGAACTGTG
AAGCGTTCAC TTTATTTGGA TGCAAAATCA GCCGAAACAA AGGCAGCTCA AAAACTCAAA
ACACTTCAAA ACATACACAT CAGTGATTGC AACAACATGA AGTTGTCCAC CTTGAAGTCC
TTATACGATA CAATTACAAC AGATTTGTTA GATGTGTACC CGGATTTGAA TCATTTCCAA
AACTTTGACA TTATTCAGAA ATTGACCAAG ATTATTACTT GTTTTGTATT GTATTTACAC
CAAAATTCTG GCTCTCAGGA TGACAACATC ACCAAGTTCT ATTTCGCAGG TTTGAAAAAC
TTGGTGGCTG TCTTCCAATT CAACTTCAAG AATACTTACA AGACATTTGT CACTATCTGT
CAATTTTTCG ACGACCATAT TCCAAGTTTG CTATTGAACT TGAGAGTCCT TGAAGATAAA
GCTGCGCAGG CCCTTTTATT GGATTCTTTC TCCAATTTGT ATCTCAATGC TTTTGAGCAA
CATTTTATGA AGAACTTGGA GAGATTGTAT ATTCACTTTA AGGTTGTTCA TTTGAAACCA
ATCGACTACT TACCTAATTT GATATTGGGT TTGTTTACCG ACCTTCTTAA TTTCGAACTT
TCCAATCACA TTCTTGATAT TTATGTTTTT GAATGTGGAA AGTTTGACGA ATTTGTTACA
AGACTTATTT TAGGTTTCTT CACGCAAATA GGACACAAAT TGTACGGTTC AAGAGACGAA
ATTTTGAAGA CACTTAAGGG CCTCGATTTC AAAGTCGATG GTAACGACGA TATTTATAGA
TATTTCAACG TTGGTTATGA ACACGATTTT ATAGAAACTA TCAGATCTGT TAAGATATAG
|
|---|
| Protein sequence | SRNSKSLSAM VAAKKSINNS HTPSPLQQQV LARSPSISSN NSNHSTTSSS QAQFVISLDK
TPQNLTPTQR LQLRKSQLNN SISKFKSDDT NISLPDEEID VADVQFSMAL FNAPLSQQFT
SISHREKFLF DNTERKSSLT NSDSTRSSSI LSQDSFNETS SSVSDYEDVS FAFYKSVNSS
FSSLEFSSIS RDAQELTLLF NKDESVQIAE ESACRQQMLN SFRKVPSPQT STASPNPLQS
YSSSRPLARN HSVSRPQAPR QNLPPLPPSQ SQVGRSSSVS KYYTFTRPTW LPPKSSYDKR
KHQKESEDIL LNAMKIEAEQ SRKKLIQLQT IKKQKLKDLK VWEALTALPT MEDYEEKLSS
VKSFDGMYWR GIPESVRGKV WWRNLNSKFK FYPNGKKDAH MNKFNVQFCE YYFQMYDSVV
LPNVKQLEKL AREHNQMKVI VDQYEGHGVR TVKRSLYLDA KSAETKAAQK LKTLQNIHIS
DCNNMKLSTL KSLYDTITTD LLDVYPDLNH FQNFDIIQKL TKIITCFVLY LHQNSGSQDD
NITKFYFAGL KNLVAVFQFN FKNTYKTFVT ICQFFDDHIP SLLLNLRVLE DKAAQALLLD
SFSNLYLNAF EQHFMKNLER LYIHFKVVHL KPIDYLPNLI LGLFTDLLNF ELSNHILDIY
VFECGKFDEF VTRLILGFFT QIGHKLYGSR DEILKTLKGL DFKVDGNDDI YRYFNVGYEH
DFIETIRSVK I
|
|---|
| |