Gene PICST_42613 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_42613 
Symbol 
ID4837541 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009042 
Strand
Start bp2634003 
End bp2635364 
Gene Length1362 bp 
Protein Length453 aa 
Translation table12 
GC content41% 
IMG OID640388856 
Productpredicted protein 
Protein accessionXP_001383253 
Protein GI150864441 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAGTTA TAGAAGACCG GACAGAAGCT CTTCTTGAAT GGATCAAGAA TACCGAGGAT 
GAAACCTTCA AACCCTCGAC CCATTCGTTT ATCTCTCCAA AGATAGAAAT CAAGCAATTC
GAACAAAGTG GAAGAGGTAT CGCAGCCAAA GATGACATTA AAAGATCCCA ACAGATCTTG
CGGATACCCC ATTCGTTCCT CCTCAATTTC ACAACGGTAG TGAGTCACAT TACAAGACAC
AACTCAAATA TCAAGCTCAA GGAGCCTTAC TATTTGGGAA TTTACGTTCC TTTAGAATCT
ACGAATAATA ATGATAAGTT CACGAATATA TACAAGAGCC TTGAGCTACA AGATTTATTG
GCATTAACAT CGTTCCAGCT ACTATCGCTC TATCTATGTT TTGAAAGACA GAGAATACAC
TCCTCGTTCT GGAAACCGTT CCTCGAGATG CTTCCAGATA TCTCTGATTT TCTGTTAAAT
CCATTGATTT GGCAAGTTTT GCAAGTAGAC CAATGGGAAG AGCTCATACA ATTTCTTCCA
GAATCGGCCA AGAGGCGTGC TGAGGATGTG TACGAAAGAT TCTTGGAAGA CTACGTCGTT
GTCAGAGCTC TTGTGTCGAG AATCCTCGAC GACTTGAAGT TAAGTGAATC TTCTGCAGAT
GAGTATATTC CCGTCGACCT TTTTCTTTGG GCCTGGATGT GTATCAATTC TCGTTGTCTC
TACATGACGA TTCCTCAGGG TAAGACGAAT GCCGATAACT TCACCATGGC ACCATATGTC
GATTTCCTAA ACCATTCTTG CAATGATGAG TGCAGCATTC TCATCGATAC GACTGGATTC
CATGTTCGTA CCACCACACC ATATATGCCA GGCGACCAAT TGTTTCTCAG TTATGGTCCT
CATTGTAATG AATTCTTGCT TTGTGAGTAC GGTTTCGTGA TTCCTCATGA TAACAAATGG
AACGATCTTG ACATTTCAGC ATACATTATT CCGCTTCTCA AACCTCAGCA TGTCGAGTTC
TTGAAAGAAA ATGATTATTT TGATAAATAT ACCATGACAA ACGAAGGGAT TTCGTTCAGA
ACAGAAGTAG TGCTAGCAAC TGTGCAAGAA AATAGTCCTC TGGTGTCCAG AAGACTCCAA
GCACTATTGA ATGGCATTGG GGATGGGGCT ACTTTCAAGA GCCACTCTCA TGTTCTCTTG
AAAGAAATAA TCAAAAAAGT ACTACACGAA TGCGATCAGT ACAAGCATCT CGAGTACAAC
GACGACAAGG ACATTAATAC TCGAGAACGA AAGAAAACCA TTGGTATTCT CTACAAGAAC
AGAAGCGAGA TAGCCAATAA CATTCTTTCC ACGCTAGAAT GA
 
Protein sequence
MTVIEDRTEA LLEWIKNTED ETFKPSTHSF ISPKIEIKQF EQSGRGIAAK DDIKRSQQIL 
RIPHSFLLNF TTVVSHITRH NSNIKLKEPY YLGIYVPLES TNNNDKFTNI YKSLELQDLL
ALTSFQLLSL YLCFERQRIH SSFWKPFLEM LPDISDFSLN PLIWQVLQVD QWEELIQFLP
ESAKRRAEDV YERFLEDYVV VRALVSRILD DLKLSESSAD EYIPVDLFLW AWMCINSRCL
YMTIPQGKTN ADNFTMAPYV DFLNHSCNDE CSILIDTTGF HVRTTTPYMP GDQLFLSYGP
HCNEFLLCEY GFVIPHDNKW NDLDISAYII PLLKPQHVEF LKENDYFDKY TMTNEGISFR
TEVVLATVQE NSPSVSRRLQ ALLNGIGDGA TFKSHSHVLL KEIIKKVLHE CDQYKHLEYN
DDKDINTRER KKTIGILYKN RSEIANNILS TLE