| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_42440 |
|---|
| Symbol | GPP1 |
|---|
| ID | 4836794 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009042 |
|---|
| Strand | + |
|---|
| Start bp | 619499 |
|---|
| End bp | 620260 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640388109 |
|---|
| Product | DL-glycerol-3-phosphatase |
|---|
| Protein accession | XP_001382355 |
|---|
| Protein GI | 126131660 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0672692 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.151042 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTATCA CTAAGAAGCC AGCTGTTTTC TACGTCAATG CCGCCTTGTT TGACTGTGAC
GGTACCTTAG TAAACTCTAC TGGAGCCATC TCCGAATTCT GGAGAGATTT CGCAAAGACA
AGACCACACG TTAACCCAGA AGAAATTATC AAGACTTCCC ACGGTGTGCG TACCTTTGAC
GTCATCGCCA AATGGTCACC AGAAGATGCC GTTGTTGAAA CTGTTACTGC CATGGAAGGT
TCGATTCCAG ACTCGTTTGG TCAATACGCC AAGCCTATTC CTGGTGCTGT TGAGTTAGTC
AAATCCTTTG ACAACTTGTC CAAGACACAG ACTGCTGATA AGAAGCAGAG ATGGGCCATT
GTCACGTCCG GCACTTTACC CTTGGCTACC AAATGGCTCA AATTGTTACA AATCAAGCAG
CCAGATATTT TCATCACGGC TGAAAAGTGC TCCAAGGGTA AGCCACACCC TCAAGGTTAC
CAAATTGCCA GAGACAGCTT GGGATACAAC CATTCTGCCA AAAAGGTAGT AGTCTTTGAA
GACGCACCTG CTGGAATTGC TGCTGGAAAG GGAGCTGGAG CCTTTATAGT CGGTATCTGT
TCCACCTACA ATCCTGAAAA GGTCAGAAGC GCTGGTGCTG ACATCGTGGT TGACGACTTG
TCCTCTTTGC ACATTGAATC CTACAACCCT GAAACTGACG AGTTCAAGGT ATTTGTGAAA
GACTACCATT ACGCCAACGA CGAATTTTTT GAGGATATCT AA
|
|---|
| Protein sequence | MTITKKPAVF YVNAALFDCD GTLVNSTGAI SEFWRDFAKT RPHVNPEEII KTSHGVRTFD
VIAKWSPEDA VVETVTAMEG SIPDSFGQYA KPIPGAVELV KSFDNLSKTQ TADKKQRWAI
VTSGTLPLAT KWLKLLQIKQ PDIFITAEKC SKGKPHPQGY QIARDSLGYN HSAKKVVVFE
DAPAGIAAGK GAGAFIVGIC STYNPEKVRS AGADIVVDDL SSLHIESYNP ETDEFKVFVK
DYHYANDEFF EDI
|
|---|
| |