| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_40062 |
|---|
| Symbol | |
|---|
| ID | 4852015 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | + |
|---|
| Start bp | 3419213 |
|---|
| End bp | 3420262 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | |
|---|
| GC content | 44% |
|---|
| IMG OID | 640393723 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001386984 |
|---|
| Protein GI | 126276312 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5291] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0629752 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACAAA CATTAGCTGA CCGGGTCAAG GCCATTCCTC CTGTGACGCG TTTCTTTACG
ATCACCTCTG TGCTCGTATG TTTGGCCATC AGATTAGAGT TTCTAAGCTT TGACCAGTTA
TTGTGGCGCT GGCATTATGA AATCCAAGAT TATCGCAGGA TCTACGAATA CAGCAAGTAC
GCTTCTCGCT CACAAACTGC CAAAAATGTA TTCTTTCAGT TTATCCAGTC GTACAGGATA
TTCACCTCGT TCTTGGTTCC TAGCGGAATG TTAGGTAGTG GTCCCCTAGA TGCCGTTTTG
GATATCTACT TTTTCTATAC CTTTGCCAAC CACTTGGAAA GTTCCCAGGG CAAGTTCAAA
GGAAATTTCG CAGATTGCTT GTGGTTCACG CTTGTGACCG GCACCAGTAT TGTCTTTGCA
TCGTTGGTGT ACAATGTAGT GTTTGACATG AGACACATGG AAGTTTACCA TCTGATGATG
CTGACGTGTA TCATCTATGT CTGGTCTAGA TATCTGAAGA ATCTGATGAT TAACTTCTTT
GGTGTAATTC CATTGAAAGC ATACTATTTA CCACTTTTCA ACATGGGTGC CCGGTTGATA
ATATCGGGTT TTGACTCTTC CGTCGACGTA TTCGTTGGTA TCTTATGTGG TTACTTGTAT
CAGTGTATTC AATCTGATAC CATGCCTTTC TACAACTTGT ATCCTACATC ATATGGCCAG
AATCCCAGTG CCCATGGTGC CAACAATGGA AGGAGGGTGG GCTCGCTGGG CTCCCGAGAA
GAAAATATTA GCAATGACTG GATTGAAGAC TCCATTTTTG ACAAGGGTTA TTTGAAGGCT
CCGTTGTGGT TTTACAATCT ACTTGGATAT CCGCTGAACA ACTCTGTGCG AGTCACCGCG
TTCACTAGGG CTCCTCACCA TAGCAGGACG GCTTCGGCTT CGGCTCCGAT GAAGAAGGAA
ACCAATGAAG GTGAAACTTC TGGTTTCTCG TGGTTTCCAA ATGAAGAGAA GGTTGTGTTT
CAAGGTAAGG GCCGTCGTCT TGGAGATTAA
|
|---|
| Protein sequence | MAQTLADRVK AIPPVTRFFT ITSVLVCLAI RLEFLSFDQL LWRWHYEIQD YRRIYEYSKY
ASRSQTAKNV FFQFIQSYRI FTSFLVPSGM LGSGPLDAVL DIYFFYTFAN HLESSQGKFK
GNFADCLWFT LVTGTSIVFA SLVYNVVFDM RHMEVYHLMM LTCIIYVWSR YLKNLMINFF
GVIPLKAYYL PLFNMGARLI ISGFDSSVDV FVGILCGYLY QCIQSDTMPF YNLYPTSYGQ
NPSAHGANNG RRVGSLGSRE ENISNDWIED SIFDKGYLKA PLWFYNLLGY PLNNSVRVTA
FTRAPHHSRT ASASAPMKKE TNEGETSGFS WFPNEEKVVF QGKGRRLGD
|
|---|
| |