| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_39206 |
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| Symbol | PDT1 |
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| ID | 4851197 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | - |
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| Start bp | 1175297 |
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| End bp | 1176388 |
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| Gene Length | 1092 bp |
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| Protein Length | 363 aa |
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| Translation table | |
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| GC content | 45% |
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| IMG OID | 640392905 |
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| Product | predicted phosphatidyl synthase |
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| Protein accession | XP_001387869 |
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| Protein GI | 126274183 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0647] Predicted sugar phosphatases of the HAD superfamily |
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| TIGRFAM ID | [TIGR01456] HAD-superfamily class IIA hydrolase, TIGR01456, CECR5
[TIGR01460] Haloacid Dehalogenase Superfamily Class (subfamily) IIA |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.116854 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0363344 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGAAAAT ATACTACTGG AAACAGCAAT TTGGCATTTG TATTTGACAT TGACGGTGTG
CTCATCCGGG GAGAAAAGGC AATTCCCGGG GCTGGACCCA CACTTGAGCT TTTGAACGAA
CACAAGGTTC CATTCATCTT GTTGACAAAT GGCGGCGGAG TTCTGGAGAA GGAAAGAGTG
CAGTTCATAT CTGAAACCGT GCAAGTTCCC ATTTCTCCTT TGCAGATTGT TCAGAGCCAT
ACCCCAATGA AGGCATTGGC CCATAAACAT GCTTACGACC GGGTCTTGGT AGTTGGTGGT
CCCGGAGATA AGGCTAGGCA CTGTGCCATT GGTTATGGAT TCCACGATGT AATAATGCCT
ATAGACATTG TTAGAGCCAA TCCGGCCGTA TCGCCTCATC ACAGATACAC AGTCGAAGAC
TTTGACCGTT ACTCCCGGGA AGTCGATTTA AAGAAACCCA TTGAGGCCAT CTTGGTGTTT
AATGACCCCA GAGACATGAC AACTGATATT CAGATTGTTT CAGATTTGCT CAATTCAGAT
CACGGAGTTA TAGGAACGAA GCGCTCTATC ACGAAGTTGA AACATCGTGA AGACCCGTCT
ATCCCCATCA TATTCAGTAA CAATGACTTC CTCTGGGCCA ATGACTATGC GTTGCCACGT
TTTGGTCAAG GTGCATTTAG AATAATCGTA GAGAACTTGT ATCGTGAAGT TAACCAATTG
AAAGACAGCC AACATTTGCA CTCTATAATT ATGGGCAAGC CGTTCAAGAT TCAGTACGAC
TTCGCCCACC ATGTGCTTAT TGACTGGCGC AACAAGCTTT TGGCAAACGA TACAAGCTCA
CAATCGCAAT TCTTGCCTAA CTTAGGTAGT GAACCCAAGA ATTCGCCGTT TAAGAGCATT
TTCATGGTGG GTGACAATCC GGCCTCTGAC ATTAAGGGTG CTAACGACAA TGGGTGGGAG
TCCATTCTCG TCAGAACAGG TGTCTACGAC AATGAGGATT TAAGCACGAT CATCGCCCAG
CCTACTGTGG GAGTATTTGA CGATGTCTAT GCGTCTGTCG AAGCAGTCTT GAAATCTCAA
AAGATTCTCT AG
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| Protein sequence | MRKYTTGNSN LAFVFDIDGV LIRGEKAIPG AGPTLELLNE HKVPFILLTN GGGVLEKERV
QFISETVQVP ISPLQIVQSH TPMKALAHKH AYDRVLVVGG PGDKARHCAI GYGFHDVIMP
IDIVRANPAV SPHHRYTVED FDRYSREVDL KKPIEAILVF NDPRDMTTDI QIVSDLLNSD
HGVIGTKRSI TKLKHREDPS IPIIFSNNDF LWANDYALPR FGQGAFRIIV ENLYREVNQL
KDSQHLHSII MGKPFKIQYD FAHHVLIDWR NKLLANDTSS QSQFLPNLGS EPKNSPFKSI
FMVGDNPASD IKGANDNGWE SILVRTGVYD NEDLSTIIAQ PTVGVFDDVY ASVEAVLKSQ
KIL
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