Gene PICST_34004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_34004 
Symbol 
ID4850805 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009068 
Strand
Start bp107320 
End bp108105 
Gene Length786 bp 
Protein Length261 aa 
Translation table 
GC content46% 
IMG OID640392513 
Productpredicted protein 
Protein accessionXP_001387676 
Protein GI126273554 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.713061 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.351185 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTAACG CCGTGGCAGA AAATGTGTTG GGGACAGCTG GAACCATTTT CTGGTGTATC 
CAGTTGATAC CCCAGATTAT CCGAAACTAC AAAGTCAAGA ATTGTGAAGG TCTTCCTCCA
CTCATGATGT TCCTCTGGGC TGCCAGTGGG ATACCATTTG CTATTTACTT CTTTGCATCT
GACGGTTCGA TTCCTTTACG AATCCAGCCG CAACTTTTCA CATTGTTCTG TACTGTTTCC
TGGGCGCAGA CGTTGTACTA CCCTCCATAC AATTTGCCTA GAAGGAGAAT GTGGATCTAC
ATCGTAGGTT TTGTCATAAT TGGCATAGCT TTGGAAGTGG GTTTCATCTT GTGGTTGCGC
CCTGTGTATC GTCACGGAAC TCACTGGCCA TTGTTGATAA TCGGTATTAT CGCTTCAATA
CTTTTGGCCG TTGGTTTAGT GCCTCCATAC TTTGAATTGG CCAAACGTCA AGGTCGTGTT
GTAGGCATCA ACTTTGTGTT TTTGTTCATG GACTCCATGG GGGCACTCTT GTCGATGTTG
AGTATCATCG TAGGCACTTT CGACATCATG TCCATGGTGT TGTATGCCAT CGTGTTGGCG
ATGGAAATCG GAATTGCAAC TAGCCATGCC ATCTGGTACT TCAGAATGGG CAAGAGGATC
ATCAAGGAAG AAAAGGCTGC CGCCAAGTTG CAAGAAGAGT CAAAGGAATG TCCGTCAGAA
AGCGACCCTT CTGATGATGT TGTCGTCGAA CAGGACGTTA TTTCCACCAA GGAAGAACTT
GCATAG
 
Protein sequence
MGNAVAENVL GTAGTIFWCI QLIPQIIRNY KVKNCEGLPP LMMFLWAASG IPFAIYFFAS 
DGSIPLRIQP QLFTLFCTVS WAQTLYYPPY NLPRRRMWIY IVGFVIIGIA LEVGFILWLR
PVYRHGTHWP LLIIGIIASI LLAVGLVPPY FELAKRQGRV VGINFVFLFM DSMGALLSML
SIIVGTFDIM SMVLYAIVLA MEIGIATSHA IWYFRMGKRI IKEEKAAAKL QEESKECPSE
SDPSDDVVVE QDVISTKEEL A