| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_33787 |
|---|
| Symbol | |
|---|
| ID | 4840941 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009048 |
|---|
| Strand | - |
|---|
| Start bp | 489732 |
|---|
| End bp | 491492 |
|---|
| Gene Length | 1761 bp |
|---|
| Protein Length | 586 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640392256 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001386684 |
|---|
| Protein GI | 150866925 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.715519 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.121325 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCCTG ATCCAAATAC AAAATACGAC GATCAGCAAC TGAAAAGGCG CAAACTCGAA
CAACAATCGT ACCCTGATGT ATCTAGAAAT ATTTCAATCT ACAGCATCTC CAGTAAGCAC
CCTTTGAACG TAAGACCAGC AGGAAACTCA TATTTGACTC TGGAAGATGT TGCATTGAAA
GAAGCAAAAC GGAACCTGTT GGGACATCTC AATATGTTCC CAGAAGAGTT ACTTATGGAA
CTCTTGACAT ACATAGACGA TAAAGAGACC TTGCGGAACC TTTCTCATAC TTCCAGAATC
CTATACGCAT ATCTTTATGA TGAAGAGATC TGGAAGAAGC TCTTTGTGAA AAGCATAGAA
GACTCGACTC AGAATCTGCC TCAAAAGTGG AACGGTTCAT GGAGATGTAC CGTACTTGGA
ATTGATAAGA AGCATCTGGC CAATATCATA CTACCAGATA ACCTTGTCTG CTCCGATATC
TTATACAGAC CTTTCCAATG TTCACAGATC AACTATGAAA AGTTATTCCG TAAAATCATA
CAGGAAGAAG AAACCTACCA TCTCGATGCC TTGTCAGATA ACCTCAAGCA ATTACCACCT
GGCCGAATTC AGAGAATACC AGAATCAGAA TTGTCTCTCG AGCAATTCAA TACAGAATAT
CATGATGTGC CCTTCATATT AACCAATAAA GACAAGACCA GGTGGCCACG CTGGGATTTT
CCAACTTTGT TAAGTCGGTT TCCGAATGTA AAATTCCGTC AAGAGGCCGT TCAGTGGGAT
TTGGCACTTT ATTCTGAGTA TTTGAAGTCT AACCTTGATG AAAACCCATT GTACTTATTC
GATTGTAGCA GTGAAGCTAT GACTACTTTA CGTAAGGAGT ATGACTCTCC TCTGATATTC
AAAGAAGACT TGTTTACTCT TTTTAACTTG AATAATGGAC AACTGAACTG CCGTCCAGAC
CATGCTTGGT TGATAGTAGG ACCAGAAAGA TCTGGTTCTA CCTTCCACAA GGATCCCAAT
TATACATCTG CATGGAATGC AGCTTTGAAG GGCAGAAAGC TTTGGGTGAT GTTACCTCCT
GGAATCACTC CACCTGGTGT AGGCACTGAT GAAGAAGAAA GCGAAGTGAC TTCACCTGTA
GGAATTGCTG AATGGGTTAT CTCAGGTTTC TTTAACGATT CGTTGAAGAT CAAGGAATGC
TTAGTGGGAA TCACATTCCC AGGTGAATGT ATGTACGTTC CATCAGGTTG GTGGCATTCG
GTTATAAACT TGGACGACTC GGTTGCGTTG ACTCAGAACT TTGTACCGTT TTCCAAATTG
ACCAATGCCA TGAACTTCTT GAAAAATAGA AGGGACCAAA TCAGTGGGTT CCGCCCCTAT
CCAGTCAAAG AATCAATTGA CTATGCGGTA GAGACGCTTC TTAAAGGAAA GAATAACGAG
GATATAGAGA AGATGAGGGA GTACAGTGAA AAATTCAATT CCTTGAACTT GGGAGAGAAG
TTAATTAATG AAGACTGCGG TGAAATCAGT GAACTACCAC CCATGCCTGT TTACGAGCTT
TTCAAGCAGT TGTTGATACT TAACGGAAAA GAAGATGAGT TGGCTACAGC TTTGGAAGAG
TTGAAGAAGC TAGAATCGAG AAACAGAGCA AAAACTTCAG GTAGGAGTGA AGCATGGGAG
AAATTGACTA CTCCGGCACT TGAAGAGCAA CAGGGATTCA GTTTCGGGTT CAACCTCGAT
GAAAGCAGCG ATGAGGAATG A
|
|---|
| Protein sequence | MSPDPNTKYD DQQSKRRKLE QQSYPDVSRN ISIYSISSKH PLNVRPAGNS YLTSEDVALK
EAKRNSLGHL NMFPEELLME LLTYIDDKET LRNLSHTSRI LYAYLYDEEI WKKLFVKSIE
DSTQNSPQKW NGSWRCTVLG IDKKHSANII LPDNLVCSDI LYRPFQCSQI NYEKLFRKII
QEEETYHLDA LSDNLKQLPP GRIQRIPESE LSLEQFNTEY HDVPFILTNK DKTRWPRWDF
PTLLSRFPNV KFRQEAVQWD LALYSEYLKS NLDENPLYLF DCSSEAMTTL RKEYDSPSIF
KEDLFTLFNL NNGQSNCRPD HAWLIVGPER SGSTFHKDPN YTSAWNAALK GRKLWVMLPP
GITPPGVGTD EEESEVTSPV GIAEWVISGF FNDSLKIKEC LVGITFPGEC MYVPSGWWHS
VINLDDSVAL TQNFVPFSKL TNAMNFLKNR RDQISGFRPY PVKESIDYAV ETLLKGKNNE
DIEKMREYSE KFNSLNLGEK LINEDCGEIS ELPPMPVYEL FKQLLILNGK EDELATALEE
LKKLESRNRA KTSGRSEAWE KLTTPALEEQ QGFSFGFNLD ESSDEE
|
|---|
| |