| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_32634 |
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| Symbol | MDR2 |
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| ID | 4840338 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009046 |
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| Strand | + |
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| Start bp | 281772 |
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| End bp | 283595 |
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| Gene Length | 1824 bp |
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| Protein Length | 607 aa |
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| Translation table | 12 |
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| GC content | 44% |
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| IMG OID | 640391653 |
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| Product | multidrug-resistance transporte |
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| Protein accession | XP_001385394 |
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| Protein GI | 150865964 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0035637 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTCGTG ATTCGTCTAC TGAAGCTCCA CAGGCGCTTG TGGAAGATCC CGAAAAGCAG
CTGCAAAAGA AAGTCTTCAT TGAGAGTGAT GCCGGTGACG GAACCAAGAG AGAGGACCAA
TATTTGCATG GTATTCATTT GGTGTTTTGT TTTATCGCGG TCTGCTTGTC CTTGTTCTTA
GAGGCTTTAG ATCAAACCAT TGTCGCTACC ATTTTAACCA CTGTCGGAAA CAAGTTCGAT
GACTTTGACA AGGTTGGCTG GTTAGCCTCA GGATTCTTGT TGGCTATGGC TGTATGCATT
CAGCCCTTCG GTAAATTCTC CATTATCTTT GGAAGAAAGT ACACTATGGT TACAGCAATC
GTTTTGTTTG AAGCTGGGTC GTTGATGTGT GCTCTTGCAA AAAATATGAA TGTTCTCATT
GGTGGTAGAG TTTTGGCTGG TATAGGTGCT GCAGGTATCC AAGGAATGGT CTTTGTAATC
GTTACAGAAG TAGTCCCTAT TGAAAAGAGA CCTATCGGTA TGGCTATTGT CAGTTGTATT
TTTGCTGTGG CCTCCGTCTT GGGTCCTTTG ATTGGTGGTG CCTTCACCTC TCACGTGTCC
TGGAGATGGG CTTTCTACAT CAACTTGCCT ATTGGTGGTA TAGCTCTAGC TTTCTTGTTA
TGGGCTTTCA ACCCTCCTAA ATGCACCTCT AGTATTGTGG AGGAGTTGAA GACTTTTGAT
TACTTTGGAA CTTTCTTATT GATTTCCGGG TGTGTTGTCT TCTTGTTGGC TTTAACCTTT
GGTGGAAACG ATTTCAGTTG GCATTCCGCT GCAGTGATTC TATGTTTTGT TCTTGGTGGT
CTTCTTCTTA TAGCCTTTAT CATTTGGAAT GGATGGTTCT CCAAGAACCA AATCATTGCC
GTTGAGTTGA TCAAGATCCC CCAGGTCGTT GCCTCCATTT TTGCAATTTC CGGTATTTTC
GCCGCCTTCA TCCTTTCAAT GGTGTTCTTG CCTATTTATT TCCAGGTCAT ACATGGTGCC
AGTGCAATGG GTGCCGGTTT GCATTTGCTT CCCATGATTG TTGCAGTTGT TCTCAGTTCA
ATTTGCAGCG GTGTTGCAAT CCAAAAGCTG AAGTACGTCA AACCATTTAG TTTGGTTGCT
GGTATTCTTG GTCCAATTGG TTTCGGTCTC TTGGCTATTC TTGGAGTTGA CACGTCGTTT
TCGGCTCAGG TTGGTCTTTT GATTATCGGT GGTGTTGCCG TTGGTGCGCA AATGCAACCT
GCTATTGTCA GTGCACAAAT CAGTGCTCCA AAGACGCCTG GTTCTACTAT CATGGTTACT
GTGCTCTTGA ACTTCAGCAG ATCCCTTGTA TCAGCTCTTG CTGCTGATCT CGGTGATGTT
ATCTACGCTT CTTCGTTTAA GAACTACTTC AAGAAGGCAT TCAAAGCTAC AACCAACACC
ACCATCTTGT CTGATTTACA GGACGTTGAC ATTTCGCAAT TAGTGTCCAA CACGTCGCTC
CTTGCACACT TGAATCCTGT CACTCAACAT TTCGTCAAGA CGCAAATTGC TAAGGCGCTC
AGAAACGTGT TCTACATGGG AATTGGGCTT GCAGCTATTA CATTCGTCGC GTGTTTCTTC
ATAACTAACA AGAAGTTGCC TGAGATGAGT GATGGAGCAG CTAATGCTGC AGAAAAAGAA
AAGGAAGAAA AAACTGAATT GACCTCTGAT TCAAATGACA TTCAGTCTGA GGCTGTCCAC
GAAATTGCAG AAGGTGCAGA CTTCGAAAAG AAAAGCATCC AAGCATCTGG AGACGAGTCT
TCTACGTCCA TTACCCGCAA GTAA
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| Protein sequence | MSRDSSTEAP QALVEDPEKQ SQKKVFIESD AGDGTKREDQ YLHGIHLVFC FIAVCLSLFL
EALDQTIVAT ILTTVGNKFD DFDKVGWLAS GFLLAMAVCI QPFGKFSIIF GRKYTMVTAI
VLFEAGSLMC ALAKNMNVLI GGRVLAGIGA AGIQGMVFVI VTEVVPIEKR PIGMAIVSCI
FAVASVLGPL IGGAFTSHVS WRWAFYINLP IGGIALAFLL WAFNPPKCTS SIVEELKTFD
YFGTFLLISG CVVFLLALTF GGNDFSWHSA AVILCFVLGG LLLIAFIIWN GWFSKNQIIA
VELIKIPQVV ASIFAISGIF AAFILSMVFL PIYFQVIHGA SAMGAGLHLL PMIVAVVLSS
ICSGVAIQKS KYVKPFSLVA GILGPIGFGL LAILGVDTSF SAQVGLLIIG GVAVGAQMQP
AIVSAQISAP KTPGSTIMVT VLLNFSRSLV SALAADLGDV IYASSFKNYF KKAFKATTNT
TILSDLQDVD ISQLVSNTSL LAHLNPVTQH FVKTQIAKAL RNVFYMGIGL AAITFVACFF
ITNKKLPEMS DGAANAAEKE KEEKTELTSD SNDIQSEAVH EIAEGADFEK KSIQASGDES
STSITRK
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