| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_31980 |
|---|
| Symbol | |
|---|
| ID | 4839142 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009045 |
|---|
| Strand | + |
|---|
| Start bp | 388400 |
|---|
| End bp | 390511 |
|---|
| Gene Length | 2112 bp |
|---|
| Protein Length | 690 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 36% |
|---|
| IMG OID | 640390457 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001384732 |
|---|
| Protein GI | 150865493 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.25184 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTCCG TTGTTCATTT TGATTTGTAT CCAGAGCATT TCTATCAAAA AATAATAGAT
GAGTTACCAT TTCTTATTGT TCTAGTACTT GCCTGCAACT CCAGTTCACC CTACCAGAGG
TACCTTCTCA ATTCCATCTA CAAAGAAATC GAAATTCAAT ATATTTCTCC TCTGCCAGGA
CTAAGACTCG AATTTTTAAA GCAATTTTAT CTTCTAAGAT ATAATGTTAT AAATCCTAGT
GATGAGAAAG ATTATGTTCC CTGTAAGGTA GTTGGAAAAA ATGTAGATCT GTTGGTAACT
TTTCTTAACG AGAATCCCCT GGTTGCTGTT CGTCATCTAC GATTGGTTGC GATACCAAGT
GAAGAAGTAA TTGCAAAAGT TAGAAGTCTT TCTGACAGAA TTGGTAAGAT TACTTTTATT
TCTGCTCGTG TAATTGATGA ACAACAAGAT GCCAGCATGA ATTGGCCAAC AGAAAGAGAC
GCAGCATACT TGTGTGGACT TCGCAGTAAG TTTGTTGAAT CAATGTATTA TCCGGAATCC
TTAGTGCATC TAGATTTAAA CTTTTCAGAT CCAACAAATT ACAGTGATAC CCTTCTGGAA
CTTCTTTTCA AGCTTCGGTA TCCACCCAGA CTTGAATTTC TAAGTTTGTC CGGTGGCAAG
GAAGCGATTG ACTCTAAAGT ATTTTCTCGC TTTCCACGAA CTATTAAATC CCTCATCTTG
GACCTCTATG ATATTCAATG TGATGGATTT TTGAAATTGA ACTTGCCTCC TTTCTTGAAA
TTTTTCTCGT GTACAGTAAT TGTTGATAAG AATAACAGAT GTTTTGATAT TTCCCATCTT
TCCCATCTTA CAGAGGTGAA ATTGTTTTTC TACTATCATC TAATTCCATT GTCTATCTTC
AGATTTCCTC GTCTGTTGCA GACATTAAGT GTGGATAGTG GCCTTTCATC TTCGGGTATG
GAACAACTTG CAGAATTAGA CCAATTAAAA CAAGTAACCA TACGTGTTTA TCGTAGTCCG
AACAATCCGG TACCAATCTT AAGGGAAGCA GTCCATTTAC CAAATTCTAT TGAAGATCTC
CTGATACAAG ATTACACTAT TGACGGCGAT GTTGATGGTG CATATTTTAT TCCAAAAAGC
ACAAAGAAGC TCCAACTTCA AAATAGCTAC GGACTTTACT TTATTCTGGA ATTGAGCGTC
TTAGAATCAC TACACATTAG CTATACTTCG TGTAGGATTC CTCATCTACA AAATTTGAAT
ACTTTGGTAA TAAAGAGTGT GGAAATTGAT TCTGTATCCA TGTGGAAAGA TGTACATCGC
CTTACAAACT TGAAACATAT GAGCATAAAT GATTGCGAAC TTGATTGCTT GAATTGCACT
CTTCCTAGTT TCCTTGAAAC TCTCGATGTT TCACGAAACA ATATCGAAGA AGCTGATATC
ATACTTCCTG CAAATTTCAA GAGTTTGGAT ATCTCTCATA ATGAAATATG CAAATTCAGT
GCTAAAGGCA GATTGTTGAC ATTGAATCTT GATACTAATC GCATGTCCGA ATTATCGAAT
TCAACTCTCT GTATCCCCTG TACCGTTTGT GAATTGAACA TGAGTAATAA CGATACGATA
TCAATTTCAA GTGACTTTTC TTTTCCAGAA TCTGTGAAGG TGTTACGCTT AGATTACAAC
TTCTTTTCTG ATTATACGGT ATTATTCAAG ATGCCTTCCC AGATCTTGTT GCTACTGTTG
GACAGTTCTT TTTTTTTATA TCCAGAAACT AAAGAACCAA CTCCAGTAAT AATGAATTAT
CCGAAGCTCT GGCATTTCAG TATGACATCC TCCATAGGTA CTGAGTATCT TGACTTCAAT
TGGAATGGTT GTCCGAATCT AGAAAGTATC TTGATGAATG GCTGCAAGTT TGAAATAATT
AAACTTGAAA ATCTTCCGCC TTCAGTCAAG ATTGTTGATT TCAGTGATTG TAAAGTTCGA
AAAGTTGAAG GAAGATTTGA GAGATTACCT CATTTGATCG AGTTCAATCT CGAAGACAAC
CGATTGGCTC CAGGAGTAGA AACTTTCGGA AAAATGGGAA TGGGTTACGT CTCCCAAGCA
TTGCGTTGGT GA
|
|---|
| Protein sequence | MDSVVHFDLY PEHFYQKIID ELPFLIVLVL ACNSSSPYQR YLLNSIYKEI EIQYISPSPG
LRLEFLKQFY LLRYNVINPS DEKDYVPCKV VGKNVDSLVT FLNENPSVAV RHLRLVAIPS
EEVIAKVRSL SDRIGKITFI SARVIDEQQD ASMNWPTERD AAYLCGLRMH LDLNFSDPTN
YSDTLSELLF KLRYPPRLEF LSLSGGKEAI DSKVFSRFPR TIKSLILDLY DIQCDGFLKL
NLPPFLKFFS CTVIVDKNNR CFDISHLSHL TEVKLFFYYH LIPLSIFRFP RSLQTLSVDS
GLSSSGMEQL AELDQLKQVT IRVYRSPNNP VPILREAVHL PNSIEDLSIQ DYTIDGDVDG
AYFIPKSTKK LQLQNSYGLY FISELSVLES LHISYTSCRI PHLQNLNTLV IKSVEIDSVS
MWKDVHRLTN LKHMSINDCE LDCLNCTLPS FLETLDVSRN NIEEADIILP ANFKSLDISH
NEICKFSAKG RLLTLNLDTN RMSELSNSTL CIPCTVCELN MSNNDTISIS SDFSFPESVK
VLRLDYNFFS DYTVLFKMPS QILLLSLDSS FFLYPETKEP TPVIMNYPKL WHFSMTSSIG
TEYLDFNWNG CPNLESILMN GCKFEIIKLE NLPPSVKIVD FSDCKVRKVE GRFERLPHLI
EFNLEDNRLA PGVETFGKMG MGYVSQALRW
|
|---|
| |