Gene PICST_31029 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_31029 
Symbol 
ID4838076 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009043 
Strand
Start bp1555579 
End bp1556228 
Gene Length650 bp 
Protein Length87 aa 
Translation table12 
GC content41% 
IMG OID640389391 
Productpredicted protein 
Protein accessionXP_001383919 
Protein GI126134789 
COG category[I] Lipid transport and metabolism 
COG ID[COG4281] Acyl-CoA-binding protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.744138 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.12604 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCATCTC AGGAATTCAC TGACAAAGTA CGTCTGCTCT GATTCAAAGC GCTGTTCGTT 
GGCGGATACA ATTTTGAAAG TTTTGTCTGC CAATGGCTCA GCTCGGGCTG GTTTTCTCCA
GCAATTCGGA TCTCATTTCG CATACTAACT AAGTGCCTAT TTAACACGTA AGTGTTTCTT
CTGATTTCAA CATTTTGTGA CGTTTTGGTG TAATGAATCT TGATAATGTG GACATTGGAT
AGTTGACATT GGTCATACTG AAGTTGTTGA ACTTGTTGAC AATCTAATTT CCAAGAATTG
ATTCACAAAC GTATAACATT GATGAACTTG AAATTATTGA TCTTATTTCT AGCATTGATT
CAATGGATCT CAATTTGAAA TCAGACGAGC AGTCGTGTTC AGGCAGCATA TAGGCCAACG
CCGTCCAAAA CTTATCTAAG CGTCCTAATG ACGACGAATT ATTGAAGTTG TACGGTTTGT
ACAAGCAAGC CACCGTTGGC GACAACACCA CTGACAAGCC AGGTATCTTT GACCTCAAGG
GCAAGTACAA GTGGCAAGCT TGGAAGGACT TGGAAGGTAC CTCTCAAGAA GAAGCCGAGC
AGAGCTACAT TGAATTGGCT ACTTCTTTGA TTGAAAAGTA CGACAGTTAG
 
Protein sequence
MPSQEFTDKA NAVQNLSKRP NDDELLKLYG LYKQATVGDN TTDKPGIFDL KGKYKWQAWK 
DLEGTSQEEA EQSYIELATS LIEKYDS