Gene PICST_30878 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_30878 
Symbol 
ID4837951 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009043 
Strand
Start bp1172528 
End bp1174105 
Gene Length1578 bp 
Protein Length525 aa 
Translation table12 
GC content43% 
IMG OID640389266 
Productpredicted protein 
Protein accessionXP_001383853 
Protein GI150864859 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTTCTA AAAGCAAGTC ATCTACTCCA ACGGTGGCTG ATTCGTCACA TCCCGCCAAT 
TCGCTTTCGT TCGGAAACGA TGACCAGATT TCCGCCCTCT CCAAACTTCA CCCTACTCTT
CTTGCCAATC AACAGGACGA GTACAACACA GACACACTAA ATGATCTCAG AGCTTCGTAC
AAATACCTCT ACGTCGTCAA CTGGCTCTAT CATTTTCGAG GATATATCAA ATTGCAGCTG
GACCTCTTTG ATGTTGACTT ATTTGAGTTG GAATTGTTGA ACTACTTCCC TCTGACCCCT
AACCACTTAC TCAACTTCGA TCCCGAAGCT TCGTCCAACG CTGCAAGTTC TTCGATGCTC
TTTATCAATC GCTTGAAGTT GGCCCTTATC TCAACTCTTC AGAACTCCAA ACTCTCGTCG
TTGAACAACT TCGAAAAGAT CTTCCGTCTT TGGTTTGGCA CAGACACACC CCTTGGTGGA
ACAGAAGATC TTGACGATGA ACAAAATGAA AATACAGAAA ACGGACCCAC AAAACCTACA
GCCGAGGATG ACATAGAGTT TGATACTTTG TCCATTTCCG ACAAGTTTGA GGTATTGTAT
ATTTTGATAT CATATATCTC GTCGTACTCC AAGTTTCGGG ACTGGGTGGA TAAGTGGGGA
CTTTCGGCCG AAAACTTGCG AGTTAACTCA CTTATAGCCG ACCCTCATAA TACCGACTCG
TACTATCTTC TTTTCGACAG CAACAGGCTC TATAAACGTG TAGTGCTGTA CCCGCAACTT
GTAATTCCTA AGAAGCGGAA GTCAGCTCCA GAGTATCCTG AGGGCCACTT TAAGCCAACA
CAATTTGATA TTTCGAAAAA CATCAAGTTC GAGTTATTGT ACAAGAACAT TTACGAGTTC
GACGAGTTTC TCAAGCGTCT GAAGAAGAGT GTCAAGCTCA AGGCGTTGGT TAACAGATTG
CATCAGAACG ATGTTGTAGA TGCTATTTTT GCCAGCGAAA TCAAAAAGAG AAAGTTCCTA
GTCAACAAGC GTAAGGAAGT ACAATTAGCT ACACTTTTGG CAACAAGGAA AAGATCTTCT
AGATTGGAAG CAAAGGAAAA ACAAAGGCAA GAAGAGTTGG AAAAGCAACG TGAACAAGAA
GAATACGAAT TGAAGTTGGC GGCGGAAAAG AGATTGGAAA GAAGAAGAAT TTTTAAAGAG
CAACAACAGC GACTCATAAA TGAAGGGCAG CGGACTGATT TCGGTTTTGG GTTGACTAGA
GAAGATAGAA TCAAACTCAG AAGACTTGAT AAAACACCTA CTTTCACACC AACACCAAAC
CCTGCAGAAG CTAGCGAAAC TGCGGACTCA GTTGAATATG AGACTGTTAA GTCAGAAGTA
GAACAAGAGT TTTCGGAAAC TGCCAATGAA ACAGCTGCAT TAGCTGCCAC AGAAGCGACA
AAGGCAACTA CGGAAGATTC TATTGAGGCG ACTTCAGAAG TTGCTGTGGC GCAAGCGGGG
CCAGTAAAGG AAGAAGTACG GGAAGTTACA GGCGTGACAC CTGAAGATAA AAACGAAGCA
AATGCCTTAG AAACTTAA
 
Protein sequence
MVSKSKSSTP TVADSSHPAN SLSFGNDDQI SALSKLHPTL LANQQDEYNT DTLNDLRASY 
KYLYVVNWLY HFRGYIKLQS DLFDVDLFEL ELLNYFPSTP NHLLNFDPEA SSNAASSSML
FINRLKLALI STLQNSKLSS LNNFEKIFRL WFGTDTPLGG TEDLDDEQNE NTENGPTKPT
AEDDIEFDTL SISDKFEVLY ILISYISSYS KFRDWVDKWG LSAENLRVNS LIADPHNTDS
YYLLFDSNRL YKRVVSYPQL VIPKKRKSAP EYPEGHFKPT QFDISKNIKF ELLYKNIYEF
DEFLKRSKKS VKLKALVNRL HQNDVVDAIF ASEIKKRKFL VNKRKEVQLA TLLATRKRSS
RLEAKEKQRQ EELEKQREQE EYELKLAAEK RLERRRIFKE QQQRLINEGQ RTDFGFGLTR
EDRIKLRRLD KTPTFTPTPN PAEASETADS VEYETVKSEV EQEFSETANE TAALAATEAT
KATTEDSIEA TSEVAVAQAG PVKEEVREVT GVTPEDKNEA NALET