Gene PICST_30440 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_30440 
Symbol 
ID4837926 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009043 
Strand
Start bp60625 
End bp61593 
Gene Length969 bp 
Protein Length322 aa 
Translation table12 
GC content43% 
IMG OID640389241 
Productpredicted protein 
Protein accessionXP_001383292 
Protein GI150864467 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.395285 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACGA AGGATCCGCG AATGTCCTTT CGCATCTCCA AGTCCAGACG AAAGCCTGAG 
ATTCCTGGAA CCTCGGTCAT CTCCATAAAT GAACAAGAAA TTCCTGGCTC TTCTGTAATG
TCATTAGACT ATCCGAGCAA AGCACAACTG AACAAGGGTA CCAAGTCATT GCACGCGACA
TCGTACGTGT TTGCAGTAGA TCGAAATGCC ATTATCTCCA AGAAGAAGAT CGTTCCAGGC
ACCTCCATAA TCAGAATTAT TCAGAAAAGA GATAACTACA TCAACTCAGA TACCGGCGGT
ATCAAATATC CTGAGATGTC AGGAAAGCGA ATATTCGCCA ATGAAGTGGA AGCTGAACCA
TCGTCGAAAT ATCAGAATGA CTCGTCGTCT TCTACAGTAT TCAATATTGA AAATATGACT
GACTTTCCTA TAGGAGAAAC TACAGACTTT GAAATTTCGC CGTCCACCTT GAAACTGAAC
CTAGAATTCG GCTCTGAGTT TGCATTTGCC ATAGGTCCTG TGGTTGGTGA TCTGAGGTCT
AGAGAAAGCT CTCCCAGACC TGACTGTGAT CGCGTAGAAT CTACAATAGT ATTAGAAACA
GGCTCAAGAA AACATACGAC CACAGAAAAC AAAATACAAT CAGTGACAAC TCCCTATGTA
TGGGATAGTC TGGTTACTAG CAAAAATGCA ACGGCAAACA AACATCATTC GGCCATAATA
CGAACTAAGC AGCAATCGAC GTTTTCTGTA AATTTGCTGC CCCACACAAA TCTGTCACCA
GGACGGGCAC TCAAATTCAA ATTGCGGGAA GACAAGCGGG AGAAAGCAGT TCCGGGAACT
TCTATCATAT TTGAGAATAA CGAAATTACA AACTTATCGA ATCAAGGGGG AAAGAAGTCT
TCCACTGGCT TACGGTTGGC TGACCAGGGT ACCAAGGCCT GGCAGGTCTT TACCACCGGC
AAAAACTAG
 
Protein sequence
MKTKDPRMSF RISKSRRKPE IPGTSVISIN EQEIPGSSVM SLDYPSKAQS NKGTKSLHAT 
SYVFAVDRNA IISKKKIVPG TSIIRIIQKR DNYINSDTGG IKYPEMSGKR IFANEVEAEP
SSKYQNDSSS STVFNIENMT DFPIGETTDF EISPSTLKSN LEFGSEFAFA IGPVVGDSRS
RESSPRPDCD RVESTIVLET GSRKHTTTEN KIQSVTTPYV WDSSVTSKNA TANKHHSAII
RTKQQSTFSV NLSPHTNSSP GRALKFKLRE DKREKAVPGT SIIFENNEIT NLSNQGGKKS
STGLRLADQG TKAWQVFTTG KN